Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6WWZ	21950	2023-05-04	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.07	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9450	1211	6	0	0	0	0	logfile
✘	6UE7	20749	2023-05-05	2019-09-20	2.9	3.95	—	3.8	0.007	1.05	0.0	0.06	12.90	0.01	2.051	2.95	0.50	10.2	89.8	0.0	-3.16	0.81	0.81	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11701	1571	13	0	16	0	0	logfile
✘	7V83	31788	2023-05-16	2021-08-22	2.8	3.28	—	3.2	0.005	0.63	0.0	0.05	14.05	0.00	2.147	10.09	0.00	5.7	94.3	0.0	-0.33	0.76	0.79	1.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40162	4902	40	0	89	0	0	logfile
✘	8DGC	27421	2023-05-13	2022-06-23	3.4	3.02	3.70	3.0	0.006	0.96	2.0	0.05	13.60	0.01	1.993	1.47	0.14	1.9	98.1	0.0	-0.33	0.51	0.52	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81600	10216	16	0	16	0	0	logfile
✘	7V7Z	31784	2023-05-16	2021-08-22	3.1	3.78	—	3.6	0.004	0.61	0.0	0.05	14.10	0.00	2.123	9.28	0.00	4.9	95.1	0.0	-1.02	0.77	0.74	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39851	4884	41	0	79	0	0	logfile
✘	7CM6	30402	2023-05-15	2020-07-25	3.0	2.48	—	3.0	0.004	0.82	0.0	0.05	8.42	0.01	2.281	3.06	0.00	3.6	96.4	0.0	-4.13	0.72	0.74	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38680	4888	16	0	8	0	0	logfile
✘	8EGS	28129	2023-05-13	2022-09-13	3.92	4.06	3.83	4.0	0.003	0.57	0.0	0.04	14.97	0.00	0.357	27.78	0.35	3.7	96.3	0.0	-0.21	0.78	0.80	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30696	3756	18	0	0	0	0	logfile
✘	7SZK	25571	2023-05-12	2021-11-28	2.94	3.14	—	3.2	0.015	0.79	0.0	0.07	14.67	0.00	1.985	31.61	0.00	6.1	93.8	0.0	0.28	0.71	0.81	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29759	3683	10	36	4	0	0	logfile
✘	7YR1	34042	2023-05-12	2022-08-08	3.62	3.91	3.63	3.8	0.004	0.66	0.0	0.05	13.70	0.00	2.141	8.03	0.00	9.0	91.0	0.0	-1.68	0.78	0.84	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30336	3768	36	0	81	0	0	logfile
✘	7RR6	24653	2023-05-10	2021-08-09	3.1	3.36	3.18	3.3	0.008	1.21	12.0	0.08	15.64	0.01	2.102	14.14	0.44	5.0	95.0	0.0	-1.19	0.74	0.84	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23821	3063	6	0	35	0	0	logfile
✘	7P3W	13186	2023-05-15	2021-07-08	4.3	5.72	—	4.5	0.006	0.87	3.0	0.05	13.88	0.00	2.074	27.29	0.05	6.3	93.7	0.0	-0.91	0.87	0.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37149	4900	26	0	8	0	0	logfile
✘	7PMN	13539	2023-05-11	2021-09-02	3.2	3.93	—	3.5	0.007	0.94	0.0	0.05	14.26	0.01	1.984	0.34	0.55	2.9	97.1	0.0	-0.35	0.79	0.71	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74640	9131	28	67	11	0	0	logfile
✘	7WRL	32732	2023-05-03	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3251	419	3	0	0	0	0	logfile
✘	7RR8	24655	2023-05-10	2021-08-09	3.51	3.20	3.53	3.1	0.005	0.79	3.0	0.05	14.25	0.00	2.213	7.81	0.12	2.9	97.1	0.0	0.59	0.75	0.85	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23929	3075	6	0	26	0	0	logfile
✘	7CP9	30421	2023-05-03	2020-08-06	3.0	3.22	—	3.2	0.007	1.24	0.0	0.04	16.75	0.00	2.183	8.57	7.05	6.5	93.5	0.0	-2.50	0.57	0.74	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8530	1021	16	0	11	0	0	logfile
✘	7MN5	23916	2023-05-04	2021-04-30	2.93	3.53	3.04	3.3	0.013	1.46	0.0	0.08	10.99	0.01	2.311	0.48	0.00	3.3	96.7	0.0	-0.05	0.82	0.81	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9526	1213	8	0	13	0	0	logfile
✘	7UZ8	26882	2023-05-12	2022-05-08	3.1	3.30	3.17	3.3	0.004	0.62	0.0	0.05	13.18	0.00	2.085	10.88	0.06	3.4	96.6	0.0	-0.23	0.68	0.79	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30075	3801	15	0	33	0	0	logfile
✘	6RJA	4901	2023-05-08	2019-04-26	3.0	3.11	—	3.1	0.005	0.86	0.0	0.05	14.79	0.01	2.314	2.75	0.23	5.8	94.2	0.0	-3.51	0.64	0.81	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20372	1996	8	194	0	0	0	logfile
✘	7LWD	23545	2023-05-03	2021-03-01	3.65	3.91	3.58	3.9	0.011	0.97	0.0	0.04	14.88	0.00	2.024	11.24	0.00	6.4	93.6	0.0	-4.15	0.67	0.81	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6163	769	4	0	3	0	0	logfile
✘	6VL6	21231	2023-05-09	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile

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