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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5G05 | 3388 | 2024-01-19 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.69 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.004 | 0.88 | 3.0 | 0.04 | 17.62 | 0.00 | 1.935 | 18.68 | 4.41 | 4.9 | 94.6 | 0.5 | 0.80 | 1.69 | 0.89 | 0.85 | 1.26 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 7R89 | 24312 | 2024-01-19 | 2021-06-26 | 2.6 | 2.92 | — | 2.9 | 0.002 | 0.56 | 0.0 | 0.04 | 14.78 | 0.00 | 2.221 | 7.92 | 3.39 | 3.8 | 96.2 | 0.0 | -1.46 | 0.71 | 0.86 | 3.40 | 2.8 | 0.002 | 0.58 | 0.0 | 0.04 | 16.02 | 0.00 | 2.257 | 6.41 | 2.43 | 4.2 | 95.8 | 0.0 | 1.18 | 0.97 | 0.72 | 0.90 | 3.65 | 10531 | 1332 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7B5N | 12041 | 2024-01-19 | 2020-12-05 | 3.6 | 3.39 | 3.52 | 3.7 | 0.007 | 0.79 | 0.0 | 0.05 | 15.39 | 0.00 | 1.998 | 13.46 | 0.09 | 9.3 | 90.7 | 0.0 | -1.35 | 0.78 | 0.81 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9965 | 1229 | 9 | 0 | 10 | 0 | 0 | logfile |
✔ | 8EJG | 28181 | 2024-01-19 | 2022-09-16 | 3.13 | 3.83 | 3.14 | 3.5 | 0.025 | 1.94 | 3.0 | 0.17 | 21.61 | 0.01 | 2.106 | 0.88 | 0.00 | 6.4 | 93.6 | 0.0 | -1.09 | 0.86 | 0.81 | 3.20 | 3.5 | 0.004 | 0.90 | 0.0 | 0.05 | 14.48 | 0.00 | 2.220 | 10.14 | 2.90 | 7.8 | 91.8 | 0.4 | -0.76 | 1.51 | 0.86 | 0.81 | 2.61 | 9966 | 1083 | 36 | 0 | 102 | 0 | 0 | logfile |
✔ | 7V27 | 31638 | 2024-01-17 | 2021-08-07 | 4.18 | 4.43 | — | 4.2 | 0.002 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 2.229 | 9.54 | 0.00 | 9.2 | 90.8 | 0.0 | -4.40 | 0.85 | 0.80 | — | 4.2 | 0.004 | 0.70 | 0.0 | 0.05 | 12.04 | 0.00 | 2.152 | 20.34 | 0.00 | 11.1 | 88.9 | 0.0 | -2.53 | 0.76 | 0.86 | 0.82 | — | 3252 | 421 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DSV | 30847 | 2024-01-18 | 2021-01-03 | 3.4 | 3.02 | — | 3.2 | 0.008 | 1.06 | 2.0 | 0.06 | 13.92 | 0.01 | 2.180 | 14.28 | 1.75 | 8.4 | 91.6 | 0.0 | -1.28 | 0.61 | 0.77 | 2.46 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.350 | 8.06 | 1.75 | 5.9 | 94.1 | 0.0 | 1.11 | 1.10 | 0.61 | 0.75 | 2.19 | 9340 | 1296 | 6 | 0 | 16 | 0 | 0 | logfile |
✔ | 6TAS | 10426 | 2024-01-18 | 2019-10-30 | 2.75 | 2.69 | — | 3.8 | 0.006 | 0.87 | 4.0 | 0.06 | 14.84 | 0.01 | 2.094 | 12.58 | 0.11 | 7.7 | 92.3 | 0.0 | -1.28 | 0.53 | 0.75 | 2.28 | 2.7 | 0.004 | 0.63 | 0.0 | 0.04 | 17.57 | 0.00 | 2.157 | 6.44 | 3.17 | 5.9 | 94.1 | 0.0 | 0.75 | 0.54 | 0.59 | 0.81 | 2.27 | 8552 | 1044 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CK6 | 30382 | 2024-01-18 | 2020-07-15 | 3.4 | 4.40 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.06 | 13.47 | 0.00 | 1.652 | 36.32 | 4.12 | 6.1 | 93.1 | 0.8 | 0.38 | 0.57 | 0.73 | 0.93 | 4.1 | 0.004 | 1.07 | 0.0 | 0.05 | 16.50 | 0.00 | 2.144 | 17.39 | 3.62 | 6.3 | 93.7 | 0.0 | 1.01 | 3.66 | 0.58 | 0.80 | 1.00 | 7460 | 936 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NEQ | 12290 | 2024-01-19 | 2021-02-04 | 3.12 | 2.80 | — | 3.1 | 0.007 | 0.79 | 0.0 | 0.05 | 16.91 | 0.00 | 1.600 | 15.40 | 5.56 | 7.9 | 92.1 | 0.0 | -3.70 | 0.74 | 0.81 | 3.24 | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 17.19 | 0.00 | 2.208 | 8.74 | 6.59 | 6.9 | 93.1 | 0.0 | -1.01 | 0.79 | 0.75 | 0.83 | 3.27 | 12529 | 1582 | 11 | 0 | 7 | 16 | 0 | logfile |
✔ | 8TZJ | 41760 | 2024-01-20 | 2023-08-27 | 3.51 | 3.99 | 3.46 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 12.13 | 0.00 | 2.229 | 2.62 | 0.15 | 1.8 | 98.2 | 0.0 | 2.16 | 0.65 | 0.77 | 1.68 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 15.22 | 0.00 | 1.877 | 6.51 | 1.32 | 2.0 | 98.0 | 0.0 | 2.61 | 0.87 | 0.69 | 0.81 | 1.34 | 13346 | 846 | 6 | 0 | 4 | 0 | 6772 | logfile |
✔ | 6UUS | 20901 | 2024-01-18 | 2019-10-31 | 2.4 | 2.10 | 2.30 | 2.4 | 0.002 | 0.50 | 0.0 | 0.04 | 17.13 | 0.00 | 2.214 | 7.50 | 3.27 | 2.8 | 97.2 | 0.0 | -2.25 | 0.57 | 0.73 | 3.22 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 17.63 | 0.00 | 2.181 | 9.64 | 3.27 | 3.7 | 96.3 | 0.0 | 0.37 | 0.98 | 0.64 | 0.78 | 3.63 | 9308 | 1190 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VSH | 32111 | 2024-01-19 | 2021-10-26 | 3.4 | 3.00 | 3.26 | 3.3 | 0.005 | 1.10 | 0.0 | 0.04 | 14.52 | 0.01 | 1.964 | 7.02 | 0.25 | 6.1 | 93.9 | 0.0 | -1.53 | 0.70 | 0.83 | 3.17 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.33 | 0.00 | 1.950 | 7.84 | 1.58 | 5.5 | 94.5 | 0.0 | -0.44 | 0.36 | 0.69 | 0.86 | 2.71 | 10992 | 1352 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 6BF8 | 7092 | 2024-01-20 | 2017-10-26 | 4.2 | 4.69 | 4.96 | 7.4 | 0.007 | 1.21 | 0.0 | 0.06 | 11.02 | 0.01 | 2.252 | 7.53 | 0.00 | 3.8 | 96.2 | 0.0 | -4.13 | 0.80 | 0.71 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.58 | 0.00 | 2.122 | 23.08 | 0.00 | 7.5 | 92.5 | 0.0 | -1.12 | 2.33 | 0.80 | 0.72 | — | 15412 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KY5 | 23068 | 2024-01-19 | 2020-12-07 | 3.98 | 4.52 | — | 4.3 | 0.004 | 1.09 | 0.0 | 0.05 | 13.56 | 0.01 | 2.200 | 16.72 | 0.07 | 6.6 | 93.4 | 0.0 | -1.06 | 0.72 | 0.75 | 0.32 | 4.3 | 0.003 | 0.84 | 0.0 | 0.04 | 15.19 | 0.00 | 2.103 | 18.73 | 3.27 | 6.0 | 94.0 | 0.0 | -0.98 | 0.56 | 0.73 | 0.77 | 0.48 | 12483 | 1534 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6QPW | 4616 | 2024-01-17 | 2019-02-15 | 3.3 | 3.57 | — | 3.6 | 0.005 | 0.99 | 0.0 | 0.06 | 16.13 | 0.01 | 2.122 | 5.83 | 0.14 | 5.0 | 95.0 | 0.0 | -3.55 | 0.70 | 0.75 | 3.06 | 3.6 | 0.005 | 0.70 | 0.0 | 0.05 | 17.79 | 0.00 | 2.023 | 15.27 | 4.92 | 6.4 | 93.6 | 0.0 | -0.88 | 1.08 | 0.72 | 0.79 | 2.36 | 6784 | 839 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2024-01-19 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.38 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.7 | 0.003 | 0.55 | 0.0 | 0.04 | 15.06 | 0.00 | 2.188 | 8.41 | 1.25 | 1.5 | 98.5 | 0.0 | 0.48 | 0.93 | 0.76 | 0.78 | 3.12 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7NSC | 12564 | 2024-01-18 | 2021-03-05 | 3.3 | 3.46 | 3.32 | 3.4 | 0.005 | 0.71 | 0.0 | 0.04 | 14.50 | 0.00 | 1.732 | 9.65 | 0.10 | 8.3 | 91.7 | 0.0 | -1.46 | 0.77 | 0.81 | 2.53 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 16.20 | 0.00 | 2.155 | 8.02 | 2.08 | 5.6 | 94.4 | 0.0 | -0.16 | 0.90 | 0.76 | 0.81 | 1.32 | 9327 | 1230 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2024-01-18 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.006 | 0.66 | 0.0 | 0.05 | 18.04 | 0.00 | 2.045 | 10.85 | 6.11 | 0.8 | 99.2 | 0.0 | -0.90 | 1.04 | 0.79 | 0.83 | 3.07 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 7YNo | 33967 | 2024-01-17 | 2022-07-31 | 2.8 | 2.92 | 2.23 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 12.19 | 0.00 | 2.252 | 22.12 | 0.00 | 7.3 | 92.7 | 0.0 | -3.47 | 0.41 | 0.77 | 5.69 | 3.1 | 0.003 | 0.67 | 0.0 | 0.05 | 14.57 | 0.00 | 2.263 | 8.01 | 1.94 | 2.5 | 97.5 | 0.0 | -2.04 | 0.36 | 0.42 | 0.79 | 4.68 | 2562 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6K7H | 9932 | 2024-01-19 | 2019-06-07 | 3.22 | 3.37 | 3.03 | 3.3 | 0.011 | 1.11 | 0.0 | 0.06 | 15.60 | 0.01 | 2.274 | 5.60 | 1.13 | 6.5 | 93.5 | 0.0 | -3.82 | 0.65 | 0.85 | 3.45 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 16.43 | 0.00 | 2.142 | 8.84 | 2.52 | 5.7 | 94.3 | 0.0 | -0.25 | 0.93 | 0.66 | 0.87 | 2.86 | 10577 | 1312 | 4 | 0 | 6 | 0 | 0 | logfile |