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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YCG | 33738 | 2024-01-18 | 2022-07-01 | 3.18 | 4.71 | 3.37 | 3.5 | 0.002 | 0.50 | 0.0 | 0.03 | 23.15 | 0.00 | 1.893 | 15.83 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.84 | — | 3.5 | 0.007 | 0.66 | 0.0 | 0.04 | 23.33 | 0.00 | 1.854 | 32.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.31 | 0.95 | 0.90 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 7LBE | 23252 | 2024-01-20 | 2021-01-07 | 2.9 | 3.31 | — | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 13.53 | 0.00 | 2.200 | 3.47 | 0.00 | 2.8 | 97.2 | 0.0 | 1.20 | 0.69 | 0.82 | 3.12 | 3.2 | 0.005 | 0.67 | 0.0 | 0.05 | 15.67 | 0.00 | 2.126 | 7.77 | 2.39 | 3.6 | 96.4 | 0.0 | 0.46 | 0.43 | 0.70 | 0.85 | 2.83 | 13511 | 1653 | 13 | 0 | 27 | 0 | 0 | logfile |
✔ | 7PBD | 13290 | 2024-01-20 | 2021-08-02 | 3.04 | 3.81 | 3.11 | 3.5 | 0.005 | 0.76 | 0.0 | 0.10 | 14.78 | 0.00 | 2.062 | 4.44 | 0.00 | 3.8 | 96.2 | 0.0 | 0.14 | 0.77 | 0.82 | 3.43 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 14.08 | 0.00 | 2.192 | 6.37 | 1.14 | 3.1 | 96.8 | 0.1 | 1.03 | 0.38 | 0.78 | 0.85 | 2.78 | 14822 | 1784 | 15 | 0 | 25 | 0 | 0 | logfile |
✔ | 7oP1 | 13011 | 2024-01-18 | 2021-05-28 | 3.7 | 3.77 | — | 3.6 | 0.004 | 1.16 | 0.0 | 0.04 | 13.67 | 0.00 | 1.848 | 7.11 | 0.00 | 4.7 | 95.3 | 0.0 | -0.69 | 0.69 | 0.87 | 2.43 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 14.91 | 0.00 | 1.725 | 4.95 | 0.83 | 3.3 | 96.7 | 0.0 | 0.60 | 0.28 | 0.70 | 0.85 | 1.44 | 8744 | 1098 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7KB5 | 22787 | 2024-01-18 | 2020-10-01 | 3.8 | 4.51 | 3.86 | 4.0 | 0.004 | 0.64 | 0.0 | 0.04 | 13.76 | 0.00 | 2.163 | 7.30 | 0.00 | 4.4 | 95.6 | 0.0 | -1.47 | 0.65 | 0.84 | 1.16 | 4.0 | 0.007 | 0.77 | 0.0 | 0.04 | 15.26 | 0.00 | 2.076 | 12.09 | 1.53 | 4.4 | 95.6 | 0.0 | 1.76 | 1.04 | 0.65 | 0.85 | 1.18 | 9777 | 1252 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PQX | 13606 | 2024-01-18 | 2021-09-20 | 3.08 | 3.48 | — | 3.4 | 0.010 | 1.11 | 0.0 | 0.06 | 14.20 | 0.01 | 2.296 | 4.37 | 0.00 | 4.3 | 95.7 | 0.0 | -2.13 | 0.69 | 0.85 | 2.92 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.62 | 0.00 | 2.209 | 8.64 | 2.29 | 3.1 | 96.9 | 0.0 | 1.44 | 0.92 | 0.69 | 0.86 | 2.54 | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PR1 | 13607 | 2024-01-18 | 2021-09-20 | 2.81 | 3.22 | 2.90 | 3.1 | 0.007 | 0.95 | 0.0 | 0.05 | 14.35 | 0.00 | 2.053 | 7.90 | 0.00 | 2.1 | 97.9 | 0.0 | -0.18 | 0.63 | 0.83 | 3.36 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 16.39 | 0.00 | 2.153 | 10.59 | 1.44 | 2.0 | 98.0 | 0.0 | 1.77 | 0.94 | 0.57 | 0.81 | 3.05 | 9222 | 1174 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PEW | 13359 | 2024-01-20 | 2021-08-11 | 4.6 | 5.68 | — | 4.1 | 0.006 | 0.91 | 0.0 | 0.05 | 30.19 | 0.01 | 2.249 | 5.53 | 0.00 | 1.1 | 98.9 | 0.0 | -0.20 | 0.89 | 0.85 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 29.58 | 0.00 | 2.170 | 19.67 | 0.00 | 2.4 | 97.6 | 0.0 | 1.56 | 1.21 | 0.89 | 0.86 | — | 13304 | 768 | 10 | 352 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2024-01-17 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.85 | 0.0 | 0.04 | 5.41 | 0.00 | 2.334 | 6.19 | 0.00 | 9.6 | 90.4 | 0.0 | -1.73 | 1.59 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N78 | 24223 | 2024-01-18 | 2021-06-09 | 3.0 | 3.81 | 3.01 | 3.5 | 0.010 | 0.96 | 0.0 | 0.06 | 13.02 | 0.01 | 1.930 | 8.14 | 0.00 | 2.6 | 97.4 | 0.0 | -1.34 | 0.71 | 0.83 | 3.03 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.66 | 0.00 | 2.008 | 6.31 | 1.36 | 1.6 | 98.4 | 0.0 | 2.17 | 0.43 | 0.64 | 0.76 | 1.78 | 7669 | 1030 | 1 | 0 | 11 | 3 | 0 | logfile |
✔ | 7PFX | 13383 | 2024-01-20 | 2021-08-12 | 4.3 | 7.46 | — | 4.0 | 0.006 | 0.88 | 0.0 | 0.05 | 30.29 | 0.01 | 2.234 | 6.11 | 0.00 | 1.3 | 98.7 | 0.0 | 0.30 | 0.91 | 0.85 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 30.16 | 0.00 | 2.097 | 20.30 | 0.00 | 2.5 | 97.5 | 0.0 | 1.99 | 1.56 | 0.91 | 0.86 | — | 13880 | 843 | 11 | 354 | 0 | 0 | 0 | logfile |
✔ | 7PF6 | 13369 | 2024-01-20 | 2021-08-11 | 4.0 | 4.89 | — | 3.7 | 0.006 | 0.99 | 0.0 | 0.06 | 29.58 | 0.01 | 2.268 | 7.80 | 0.00 | 1.9 | 98.1 | 0.0 | -0.75 | 0.87 | 0.76 | — | 3.7 | 0.004 | 0.77 | 0.0 | 0.06 | 29.75 | 0.00 | 2.032 | 22.11 | 1.73 | 2.7 | 97.3 | 0.0 | 0.65 | 1.65 | 0.87 | 0.77 | — | 13470 | 843 | 11 | 334 | 0 | 0 | 0 | logfile |
✔ | 7F04 | 31396 | 2024-01-18 | 2021-06-03 | 2.86 | 3.11 | — | 3.0 | 0.005 | 0.80 | 0.0 | 0.04 | 13.87 | 0.01 | 1.706 | 9.75 | 0.00 | 6.4 | 93.4 | 0.2 | -0.04 | 0.65 | 0.83 | 3.68 | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.38 | 0.01 | 1.989 | 9.92 | 2.40 | 5.7 | 94.2 | 0.1 | 0.64 | 1.24 | 0.67 | 0.86 | 2.78 | 8934 | 1130 | 12 | 0 | 6 | 4 | 0 | logfile |
✔ | 7LKF | 23405 | 2024-01-17 | 2021-02-02 | 2.9 | 2.97 | — | 3.0 | 0.005 | 0.67 | 0.0 | 0.05 | 12.76 | 0.01 | 2.101 | 5.26 | 0.00 | 4.6 | 95.4 | 0.0 | -0.59 | 0.70 | 0.83 | 4.15 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.44 | 0.00 | 2.231 | 5.13 | 1.98 | 2.6 | 97.4 | 0.0 | -0.11 | 1.15 | 0.71 | 0.86 | 3.94 | 4139 | 511 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7PFE | 13373 | 2024-01-20 | 2021-08-11 | 4.4 | 5.35 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.05 | 29.75 | 0.01 | 2.264 | 6.87 | 0.00 | 1.5 | 98.5 | 0.0 | -0.43 | 0.91 | 0.85 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.03 | 29.09 | 0.00 | 2.131 | 16.68 | 0.00 | 2.8 | 97.2 | 0.0 | 1.33 | 1.61 | 0.91 | 0.85 | — | 13880 | 843 | 11 | 354 | 0 | 0 | 0 | logfile |
✔ | 8B71 | 15895 | 2024-01-18 | 2022-09-28 | 3.8 | 3.80 | 3.64 | 3.9 | 0.005 | 0.71 | 0.0 | 0.05 | 17.41 | 0.01 | 2.129 | 12.04 | 0.00 | 5.1 | 94.9 | 0.0 | 0.64 | 0.67 | 0.81 | 1.45 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 18.67 | 0.00 | 2.279 | 14.01 | 1.19 | 4.5 | 95.5 | 0.0 | 1.16 | 0.32 | 0.66 | 0.80 | 0.82 | 8694 | 1104 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X32 | 22015 | 2024-01-19 | 2020-05-21 | 3.8 | 3.75 | — | 3.9 | 0.001 | 0.36 | 0.0 | 0.03 | 7.99 | 0.00 | 2.266 | 3.27 | 0.00 | 1.4 | 98.6 | 0.0 | -3.72 | 0.56 | 0.69 | 2.26 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 13.13 | 0.00 | 2.125 | 8.65 | 2.35 | 2.9 | 97.1 | 0.0 | 0.59 | 1.67 | 0.60 | 0.73 | 1.88 | 114280 | 14744 | 16 | 0 | 1416 | 0 | 0 | logfile |
✔ | 7PRo | 13609 | 2024-01-18 | 2021-09-22 | 3.0 | 3.28 | 3.20 | 3.2 | 0.012 | 1.09 | 0.0 | 0.06 | 13.80 | 0.01 | 2.192 | 7.00 | 0.00 | 4.8 | 95.2 | 0.0 | -1.65 | 0.61 | 0.84 | 3.12 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 16.17 | 0.00 | 2.209 | 8.80 | 2.08 | 3.9 | 96.1 | 0.0 | 1.69 | 0.42 | 0.59 | 0.84 | 2.39 | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V5C | 31722 | 2024-01-18 | 2021-08-17 | 3.2 | 3.83 | — | 3.7 | 0.009 | 0.63 | 0.0 | 0.04 | 13.83 | 0.00 | 1.766 | 28.98 | 0.00 | 6.7 | 93.3 | 0.0 | -6.06 | 0.66 | 0.86 | 2.72 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.99 | 0.00 | 1.875 | 5.18 | 3.83 | 3.6 | 96.4 | 0.0 | -0.86 | 0.95 | 0.65 | 0.86 | 2.46 | 8916 | 1144 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PRU | 13610 | 2024-01-18 | 2021-09-22 | 3.2 | 3.55 | 3.24 | 3.5 | 0.010 | 1.05 | 0.0 | 0.06 | 14.87 | 0.01 | 2.128 | 9.65 | 0.00 | 6.8 | 93.2 | 0.0 | -2.01 | 0.67 | 0.83 | 2.06 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.31 | 0.00 | 2.241 | 11.11 | 1.97 | 5.4 | 94.6 | 0.0 | 0.94 | 1.27 | 0.65 | 0.84 | 1.79 | 9116 | 1164 | 4 | 0 | 2 | 0 | 0 | logfile |