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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HCo | 0196 | 2024-01-19 | 2018-08-15 | 3.58 | 4.08 | — | 3.7 | 0.009 | 1.05 | 0.0 | 0.06 | 10.57 | 0.01 | 2.082 | 7.85 | 0.45 | 7.9 | 92.1 | 0.0 | -4.59 | 0.65 | 0.75 | 1.63 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 13.01 | 0.00 | 2.136 | 13.27 | 1.41 | 6.1 | 93.9 | 0.0 | -0.31 | 1.45 | 0.67 | 0.82 | 2.10 | 12338 | 1576 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7A7A | 11676 | 2024-01-19 | 2020-08-27 | 3.08 | 3.57 | 3.16 | 3.5 | 0.009 | 0.75 | 0.0 | 0.05 | 13.72 | 0.01 | 2.167 | 9.13 | 0.00 | 9.0 | 91.0 | 0.0 | -2.02 | 0.82 | 0.87 | 3.53 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 14.90 | 0.00 | 2.210 | 7.47 | 1.18 | 5.0 | 95.0 | 0.0 | -0.65 | 0.76 | 0.82 | 0.88 | 2.60 | 10147 | 1324 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PPB | 20432 | 2024-01-19 | 2019-07-06 | 4.3 | 4.18 | 3.99 | 4.2 | 0.006 | 0.97 | 0.0 | 0.05 | 10.22 | 0.01 | 2.200 | 4.21 | 0.31 | 4.9 | 95.0 | 0.1 | -4.52 | 0.47 | 0.79 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 13.51 | 0.00 | 2.085 | 10.47 | 0.06 | 4.8 | 95.2 | 0.0 | -1.44 | 1.37 | 0.49 | 0.82 | — | 62671 | 7953 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HGo | 34744 | 2024-01-18 | 2022-11-15 | 3.31 | 2.35 | 3.32 | 2.2 | 0.004 | 0.71 | 0.0 | 0.05 | 9.52 | 0.01 | 2.284 | 4.45 | 0.00 | 8.0 | 91.8 | 0.2 | -3.74 | 0.71 | 0.68 | 2.06 | 2.0 | 0.004 | 0.76 | 0.0 | 0.05 | 14.31 | 0.00 | 2.132 | 13.41 | 2.63 | 8.2 | 91.8 | 0.0 | -2.52 | 1.37 | 0.74 | 0.75 | 3.34 | 9227 | 1178 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 7oJK | 12954 | 2024-01-20 | 2021-05-16 | 3.89 | 4.14 | 3.97 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 14.92 | 0.00 | 2.174 | 10.15 | 0.06 | 15.2 | 84.5 | 0.2 | -4.19 | 0.88 | 0.81 | 1.38 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 16.36 | 0.00 | 2.141 | 11.40 | 1.54 | 8.2 | 91.8 | 0.0 | -0.88 | 0.72 | 0.89 | 0.83 | 1.08 | 15316 | 1843 | 4 | 21 | 1 | 0 | 0 | logfile |
✔ | 7X07 | 32919 | 2024-01-19 | 2022-02-21 | 3.78 | 4.03 | — | 4.0 | 0.013 | 1.66 | 0.0 | 0.08 | 15.38 | 0.01 | 2.145 | 8.39 | 1.97 | 8.1 | 91.2 | 0.7 | -4.75 | 0.61 | 0.78 | 1.72 | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 17.10 | 0.00 | 2.266 | 8.84 | 2.34 | 7.6 | 92.4 | 0.0 | -2.99 | 0.50 | 0.60 | 0.74 | 1.14 | 10125 | 1266 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7K7i | 22700 | 2024-01-20 | 2020-09-22 | 3.13 | 3.82 | 3.10 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 12.85 | 0.00 | 2.211 | 11.41 | 0.00 | 12.2 | 87.8 | 0.0 | -5.32 | 0.75 | 0.73 | 3.80 | 3.4 | 0.003 | 0.74 | 0.0 | 0.05 | 15.29 | 0.00 | 2.160 | 15.99 | 2.48 | 10.0 | 90.0 | 0.0 | -2.91 | 1.44 | 0.81 | 0.85 | 3.01 | 13195 | 1705 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TAC | 25769 | 2024-01-19 | 2021-12-20 | 3.6 | 3.94 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.71 | 0.01 | 2.149 | 12.22 | 0.00 | 2.3 | 97.7 | 0.0 | 0.94 | 0.66 | 0.69 | 1.31 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 16.86 | 0.00 | 2.158 | 8.84 | 2.03 | 2.5 | 97.5 | 0.0 | 2.80 | 0.60 | 0.66 | 0.71 | 1.03 | 11842 | 1526 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Mi8 | 23842 | 2024-01-20 | 2021-04-16 | 3.7 | 4.01 | 3.56 | 3.8 | 0.006 | 0.97 | 0.0 | 0.05 | 14.13 | 0.01 | 2.226 | 5.27 | 0.38 | 2.4 | 97.4 | 0.1 | -3.11 | 0.79 | 0.84 | 2.27 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.59 | 0.00 | 2.185 | 10.25 | 3.58 | 3.5 | 96.5 | 0.0 | 1.09 | 0.65 | 0.81 | 0.86 | 1.61 | 7034 | 868 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FVW | 4322 | 2024-01-18 | 2018-03-05 | 4.5 | 4.60 | — | 4.6 | 0.035 | 3.52 | 888.0 | 0.20 | 17.66 | 0.03 | 0.436 | 3.52 | 2.98 | 5.7 | 92.3 | 2.0 | -2.29 | 0.50 | 0.54 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.00 | 0.00 | 1.910 | 18.23 | 0.07 | 4.6 | 95.2 | 0.2 | -0.55 | 2.32 | 0.55 | 0.77 | — | 110594 | 14032 | 59 | 0 | 12 | 20 | 0 | logfile |
✔ | 7M3L | 23656 | 2024-01-17 | 2021-03-18 | 3.2 | 4.99 | — | 3.3 | 0.009 | 0.97 | 0.0 | 0.06 | 15.05 | 0.01 | 1.551 | 6.78 | 0.30 | 9.1 | 90.6 | 0.3 | -3.19 | 0.29 | 0.38 | 0.40 | 3.1 | 0.004 | 0.76 | 0.0 | 0.04 | 15.43 | 0.00 | 2.143 | 17.65 | 2.11 | 8.6 | 91.3 | 0.1 | -1.11 | 3.79 | 0.46 | 0.76 | 2.18 | 6113 | 775 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UE7 | 20749 | 2024-01-19 | 2019-09-20 | 2.9 | 3.95 | — | 3.8 | 0.007 | 1.05 | 0.0 | 0.06 | 13.76 | 0.01 | 2.051 | 2.95 | 0.50 | 10.2 | 89.8 | 0.0 | -3.16 | 0.81 | 0.81 | 3.11 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.38 | 0.00 | 2.169 | 7.39 | 3.27 | 7.5 | 92.5 | 0.0 | -1.28 | 1.31 | 0.76 | 0.80 | 2.99 | 11701 | 1571 | 13 | 0 | 16 | 0 | 0 | logfile |
✔ | 6ZVJ | 11458 | 2024-01-19 | 2020-07-24 | 3.8 | 3.00 | — | 3.1 | 0.010 | 1.33 | 7.0 | 0.07 | 20.87 | 0.01 | 1.731 | 5.46 | 1.39 | 0.2 | 99.8 | 0.0 | -4.19 | 0.59 | 0.64 | 1.31 | 2.8 | 0.004 | 0.69 | 0.0 | 0.04 | 21.04 | 0.00 | 1.925 | 14.09 | 3.88 | 6.0 | 94.0 | 0.0 | -1.04 | 1.67 | 0.67 | 0.75 | 0.93 | 115020 | 10127 | 55 | 1720 | 9 | 0 | 0 | logfile |
✔ | 8i4B | 35168 | 2024-01-18 | 2023-01-19 | 3.13 | 3.35 | 3.17 | 3.4 | 0.017 | 1.07 | 0.0 | 0.06 | 14.07 | 0.01 | 2.161 | 11.06 | 0.00 | 6.0 | 94.0 | 0.0 | -2.17 | 0.60 | 0.75 | 2.25 | 3.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.64 | 0.00 | 2.091 | 7.00 | 0.94 | 1.9 | 98.1 | 0.0 | 1.56 | 1.55 | 0.60 | 0.81 | 1.74 | 9727 | 1218 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CAG | 30330 | 2024-01-19 | 2020-06-08 | 3.78 | 4.10 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.11 | 14.53 | 0.01 | 1.845 | 13.53 | 0.15 | 12.6 | 87.4 | 0.0 | -5.72 | 0.67 | 0.80 | 1.70 | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 15.95 | 0.00 | 1.990 | 10.48 | 2.65 | 9.7 | 90.3 | 0.0 | -2.99 | 0.95 | 0.67 | 0.79 | 1.25 | 12995 | 1717 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 8KB5 | 37070 | 2024-01-19 | 2023-08-03 | 2.26133 | 2.35 | 2.23 | 2.3 | 0.007 | 0.98 | 0.0 | 0.05 | 28.08 | 0.01 | 2.377 | 0.00 | 0.00 | 0.7 | 99.3 | 0.0 | 2.15 | 0.79 | 0.85 | 3.73 | 2.3 | 0.003 | 0.58 | 0.0 | 0.03 | 28.28 | 0.00 | 2.139 | 4.23 | 1.43 | 1.1 | 98.9 | 0.0 | 2.93 | 0.23 | 0.78 | 0.85 | 3.55 | 11953 | 758 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6WWZ | 21950 | 2024-01-18 | 2020-05-09 | 3.34 | 3.53 | — | 3.5 | 0.014 | 1.77 | 0.0 | 0.09 | 13.13 | 0.00 | 2.318 | 2.07 | 0.10 | 4.4 | 95.6 | 0.0 | -3.33 | 0.56 | 0.77 | 2.93 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 15.36 | 0.00 | 2.183 | 3.08 | 2.61 | 3.4 | 96.6 | 0.0 | 0.03 | 1.04 | 0.71 | 0.86 | 2.68 | 9450 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WU2 | 21903 | 2024-01-20 | 2020-05-04 | 3.36 | 3.76 | 3.55 | 3.7 | 0.010 | 0.77 | 0.0 | 0.05 | 14.78 | 0.00 | 2.074 | 6.87 | 0.76 | 7.8 | 92.0 | 0.2 | -3.14 | 0.61 | 0.86 | 3.65 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.86 | 0.00 | 2.028 | 8.02 | 1.77 | 6.1 | 93.7 | 0.2 | 0.69 | 0.58 | 0.61 | 0.87 | 2.70 | 15404 | 978 | 4 | 0 | 10 | 0 | 7812 | logfile |
✔ | 8EoP | 28451 | 2024-01-20 | 2022-10-04 | 3.7 | 3.39 | 3.69 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 15.22 | 0.00 | 2.001 | 6.86 | 0.00 | 5.6 | 94.3 | 0.1 | 0.22 | 0.60 | 0.77 | 1.59 | 3.8 | 0.002 | 0.58 | 0.0 | 0.04 | 15.38 | 0.00 | 1.992 | 7.16 | 2.09 | 5.3 | 94.7 | 0.0 | 0.59 | 1.38 | 0.63 | 0.78 | 1.41 | 13265 | 1687 | 4 | 0 | 15 | 0 | 0 | logfile |
✔ | 8GSE | 34233 | 2024-01-18 | 2022-09-06 | 3.7 | 3.78 | 3.73 | 3.8 | 0.005 | 0.68 | 0.0 | 0.05 | 13.93 | 0.01 | 2.246 | 5.81 | 0.00 | 5.9 | 94.1 | 0.0 | -1.94 | 0.43 | 0.85 | 2.71 | 3.8 | 0.003 | 0.55 | 0.0 | 0.04 | 15.74 | 0.00 | 2.208 | 5.33 | 1.33 | 4.5 | 95.5 | 0.0 | -1.47 | 1.39 | 0.42 | 0.82 | 2.39 | 7474 | 952 | 5 | 0 | 0 | 0 | 0 | logfile |