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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6M4D | 30076 | 2023-10-05 | 2020-03-06 | 4.4 | 4.58 | — | 4.3 | 0.007 | 0.84 | 0.0 | 0.05 | 31.38 | 0.01 | 2.074 | 25.84 | 0.71 | 6.6 | 92.8 | 0.6 | -2.81 | 0.88 | 0.82 | — | 4.3 | 0.004 | 0.73 | 0.0 | 0.04 | 30.70 | 0.01 | 2.175 | 19.76 | 0.00 | 3.2 | 96.2 | 0.6 | 0.16 | 1.45 | 0.88 | 0.82 | — | 10497 | 682 | 10 | 250 | 0 | 0 | 0 | logfile |
✔ | 7WZ3 | 32903 | 2023-10-04 | 2022-02-16 | 4.1 | 3.52 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 11.64 | 0.00 | 2.022 | 2.41 | 0.06 | 2.8 | 97.2 | 0.0 | -4.27 | 0.62 | 0.51 | — | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.35 | 0.00 | 2.095 | 16.87 | 0.00 | 5.1 | 94.9 | 0.0 | -0.97 | 3.40 | 0.63 | 0.55 | — | 58551 | 7652 | 22 | 0 | 6 | 0 | 0 | logfile |
✔ | 6J5i | 0677 | 2023-10-18 | 2019-01-11 | 3.34 | 3.42 | — | 3.4 | 0.009 | 1.14 | 1.0 | 0.06 | 15.52 | 0.01 | 1.358 | 7.32 | 0.89 | 7.7 | 92.1 | 0.2 | -5.57 | 0.72 | 0.73 | 1.91 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.23 | 0.00 | 1.916 | 8.44 | 0.24 | 5.5 | 94.3 | 0.1 | -1.80 | 1.49 | 0.74 | 0.76 | 1.71 | 38144 | 4995 | 35 | 0 | 228 | 0 | 0 | logfile |
✔ | 7WK1 | 32555 | 2023-10-05 | 2022-01-08 | 3.25 | 3.54 | — | 3.6 | 0.002 | 0.44 | 0.0 | 0.04 | 8.42 | 0.00 | 2.212 | 6.55 | 2.94 | 5.2 | 94.7 | 0.1 | -4.01 | 0.65 | 0.76 | 1.98 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.50 | 0.00 | 2.061 | 11.79 | 0.27 | 6.3 | 93.6 | 0.1 | -0.02 | 0.81 | 0.71 | 0.84 | 1.39 | 10200 | 1330 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2023-10-06 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.027 | 44.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 6oSQ | 20187 | 2023-10-21 | 2019-05-02 | 3.5 | 3.55 | — | 3.5 | 0.008 | 0.89 | 1.0 | 0.05 | 14.48 | 0.02 | 2.007 | 4.45 | 0.37 | 6.0 | 94.0 | 0.1 | -4.90 | 0.83 | 0.87 | 2.66 | 3.5 | 0.005 | 0.65 | 0.0 | 0.03 | 15.20 | 0.01 | 1.699 | 11.33 | 0.80 | 4.7 | 95.3 | 0.0 | -1.27 | 0.57 | 0.80 | 0.86 | 1.85 | 146756 | 5966 | 68 | 4642 | 438 | 0 | 0 | logfile |
✔ | 5TJi | 8414 | 2023-10-13 | 2016-10-04 | 3.8 | 8.35 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 11.75 | 0.00 | 2.483 | 1.87 | 0.41 | 6.0 | 93.8 | 0.2 | -3.10 | 0.73 | 0.80 | 0.32 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 12.64 | 0.00 | 2.134 | 10.94 | 0.14 | 2.6 | 97.4 | 0.0 | 0.71 | 0.70 | 0.73 | 0.84 | 0.89 | 27720 | 3528 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WU4 | 32819 | 2023-10-03 | 2022-02-05 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6887 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6P2R | 20240 | 2023-10-05 | 2019-05-21 | 3.2 | 3.36 | — | 3.3 | 0.011 | 1.48 | 0.0 | 0.06 | 12.72 | 0.01 | 2.236 | 8.11 | 0.57 | 6.8 | 93.2 | 0.0 | -4.56 | 0.63 | 0.79 | 3.61 | 3.3 | 0.005 | 0.98 | 0.0 | 0.04 | 15.09 | 0.00 | 2.141 | 14.63 | 0.32 | 5.8 | 94.2 | 0.0 | -0.35 | 0.70 | 0.63 | 0.83 | 2.65 | 11712 | 1421 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7WTC | 32778 | 2023-10-14 | 2022-02-04 | 4.0 | 4.61 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.060 | 22.27 | 0.10 | 8.0 | 92.0 | 0.1 | -0.78 | 0.86 | 0.65 | — | 3.1 | 0.005 | 0.85 | 0.0 | 0.05 | 15.80 | 0.01 | 1.970 | 30.79 | 0.60 | 9.7 | 90.3 | 0.1 | -1.51 | 1.23 | 0.88 | 0.69 | — | 28418 | 3661 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6G79 | 4358 | 2023-10-03 | 2018-04-05 | 3.78 | 3.99 | — | 4.0 | 0.008 | 1.15 | 0.0 | 0.06 | 12.12 | 0.01 | 2.442 | 0.69 | 0.56 | 4.9 | 94.6 | 0.5 | -2.95 | 0.69 | 0.80 | 2.34 | 4.0 | 0.002 | 0.61 | 0.0 | 0.04 | 14.24 | 0.00 | 2.144 | 8.92 | 0.00 | 2.1 | 97.6 | 0.2 | 0.90 | 1.28 | 0.70 | 0.80 | 2.48 | 6053 | 860 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6N7S | 0362 | 2023-10-06 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 14.71 | 0.00 | 1.879 | 15.91 | 0.00 | 5.3 | 94.7 | 0.0 | -2.15 | 1.90 | 0.71 | 0.59 | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✔ | 6BoA | 7122 | 2023-10-09 | 2017-11-18 | 4.2 | 4.31 | — | 4.3 | 0.007 | 1.29 | 0.0 | 0.06 | 11.91 | 0.01 | 2.296 | 4.73 | 1.74 | 10.5 | 89.5 | 0.0 | -5.87 | 0.73 | 0.81 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.05 | 13.51 | 0.00 | 2.139 | 12.64 | 0.19 | 10.2 | 89.8 | 0.0 | -0.72 | 1.90 | 0.74 | 0.82 | — | 19040 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEQ | 20034 | 2023-10-09 | 2019-03-27 | 4.3 | 4.55 | — | 4.3 | 0.009 | 1.05 | 0.0 | 0.06 | 22.94 | 0.01 | 1.742 | 8.94 | 0.62 | 8.7 | 91.2 | 0.1 | -4.02 | 0.88 | 0.82 | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 21.78 | 0.00 | 2.082 | 15.52 | 0.06 | 7.3 | 92.7 | 0.0 | -1.25 | 1.23 | 0.88 | 0.81 | — | 19134 | 1910 | 10 | 206 | 4 | 0 | 0 | logfile |
✔ | 6L7C | 0842 | 2023-10-10 | 2019-11-01 | 3.34 | 3.45 | — | 3.4 | 0.006 | 0.86 | 0.0 | 0.05 | 14.85 | 0.01 | 2.347 | 3.80 | 1.20 | 4.3 | 95.7 | 0.0 | -3.41 | 0.73 | 0.84 | 2.34 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.78 | 0.00 | 2.208 | 8.94 | 0.22 | 3.4 | 96.6 | 0.0 | 1.03 | 0.57 | 0.76 | 0.86 | 1.84 | 20601 | 2655 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X2J | 22009 | 2023-10-17 | 2020-05-20 | 3.0 | 2.84 | — | 3.0 | 0.014 | 2.12 | 4.0 | 0.09 | 13.75 | 0.01 | 2.398 | 1.78 | 1.34 | 3.7 | 96.0 | 0.3 | -2.17 | 0.40 | 0.60 | 3.60 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 17.09 | 0.00 | 2.005 | 7.48 | 1.45 | 2.7 | 97.3 | 0.0 | 1.78 | 1.13 | 0.57 | 0.76 | 2.62 | 35956 | 2228 | 8 | 0 | 4 | 0 | 18108 | logfile |
✔ | 5FNA | 3241 | 2023-10-03 | 2015-11-11 | 4.8 | 4.43 | — | 4.2 | 0.013 | 1.51 | 0.0 | 0.08 | 12.32 | 0.01 | 2.219 | 36.54 | 0.00 | 6.0 | 94.0 | 0.0 | -1.83 | 0.48 | 0.71 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.04 | 14.28 | 0.01 | 2.153 | 22.99 | 0.00 | 8.4 | 90.4 | 1.2 | -0.31 | 2.61 | 0.49 | 0.75 | — | 5328 | 680 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-10-08 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 7SWo | 25477 | 2023-10-03 | 2021-11-20 | 4.1 | 3.78 | — | 3.8 | 0.007 | 0.89 | 0.0 | 0.05 | 14.43 | 0.01 | 2.215 | 26.02 | 0.19 | 10.0 | 90.0 | 0.0 | -2.59 | 0.65 | 0.76 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 13.81 | 0.01 | 2.118 | 18.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.25 | 0.53 | 0.64 | 0.74 | — | 4784 | 627 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQY | 23491 | 2023-10-11 | 2021-02-15 | 3.19 | 3.30 | — | 3.3 | 0.011 | 1.42 | 0.0 | 0.18 | 21.18 | 0.01 | 2.186 | 4.96 | 0.69 | 6.6 | 93.3 | 0.2 | -5.23 | 0.74 | 0.81 | 2.82 | 3.3 | 0.002 | 0.59 | 0.0 | 0.04 | 17.30 | 0.00 | 2.217 | 8.71 | 0.39 | 5.2 | 94.8 | 0.0 | 0.47 | 0.76 | 0.76 | 0.85 | 2.41 | 22954 | 2636 | 8 | 0 | 38 | 0 | 0 | logfile |