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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5T0G | 8334 | 2023-10-27 | 2016-08-16 | 4.4 | 4.09 | — | 4.4 | 0.005 | 0.93 | 1.0 | 0.05 | 11.72 | 0.00 | 1.763 | 18.04 | 0.10 | 7.5 | 91.7 | 0.8 | -3.88 | 0.68 | 0.56 | — | 3.9 | 0.004 | 0.92 | 0.0 | 0.05 | 13.49 | 0.01 | 2.038 | 26.68 | 0.04 | 6.9 | 92.7 | 0.4 | -1.95 | 1.32 | 0.70 | 0.67 | — | 77800 | 9924 | 39 | 0 | 7 | 0 | 0 | logfile |
✔ | 6WDB | 21630 | 2023-10-26 | 2020-03-31 | 4.0 | 4.30 | 5.11 | 4.1 | 0.006 | 0.99 | 0.0 | 0.08 | 13.33 | 0.01 | 2.211 | 11.44 | 0.77 | 11.9 | 86.2 | 1.9 | -4.97 | 0.78 | 0.72 | — | 4.1 | 0.005 | 0.84 | 0.0 | 0.04 | 17.67 | 0.01 | 1.938 | 34.88 | 1.28 | 12.2 | 87.6 | 0.2 | -3.35 | 0.93 | 0.82 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 5MDV | 3489 | 2023-10-26 | 2016-11-13 | 2.97 | 3.05 | 2.97 | 3.0 | 0.008 | 1.26 | 22.0 | 0.10 | 16.59 | 0.02 | 1.257 | 3.21 | 7.74 | 4.9 | 94.7 | 0.4 | -1.77 | 0.79 | 0.88 | 3.19 | 3.0 | 0.007 | 0.72 | 0.0 | 0.04 | 15.83 | 0.01 | 1.804 | 7.63 | 4.14 | 4.1 | 95.9 | 0.0 | 0.10 | 0.47 | 0.82 | 0.89 | 2.96 | 149892 | 6382 | 67 | 4638 | 442 | 2 | 0 | logfile |
✘ | 8iPD | 35639 | 2023-10-26 | 2023-03-14 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149878 | 8564 | 53 | 3756 | 2 | 0 | 0 | logfile |
✘ | 8iR1 | 35672 | 2023-10-26 | 2023-03-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 150033 | 8866 | 54 | 3644 | 2 | 0 | 0 | logfile |
✔ | 7NWT | 12635 | 2023-10-26 | 2021-03-17 | 2.66 | 2.63 | — | 2.6 | 0.011 | 0.84 | 0.0 | 0.05 | 14.14 | 0.02 | 1.145 | 4.87 | 2.95 | 2.6 | 97.4 | 0.0 | -2.35 | 0.85 | 0.88 | 4.38 | 2.7 | 0.003 | 0.60 | 0.0 | 0.03 | 15.00 | 0.01 | 1.151 | 7.09 | 2.55 | 2.8 | 97.2 | 0.0 | 0.23 | 0.29 | 0.87 | 0.88 | 3.49 | 149932 | 6355 | 74 | 4641 | 439 | 2 | 0 | logfile |
✔ | 8AGU | 15424 | 2023-10-26 | 2022-07-20 | 2.7 | 3.26 | 2.76 | 2.7 | 0.006 | 0.90 | 6.0 | 0.05 | 15.12 | 0.01 | 1.041 | 6.23 | 1.81 | 3.6 | 96.3 | 0.1 | 0.14 | 0.92 | 0.88 | 3.27 | 2.7 | 0.004 | 0.63 | 0.0 | 0.04 | 15.46 | 0.00 | 1.928 | 9.53 | 2.06 | 4.5 | 95.5 | 0.0 | 0.54 | 1.17 | 0.93 | 0.91 | 3.21 | 149748 | 9427 | 68 | 3568 | 38 | 0 | 0 | logfile |
✔ | 8AGX | 15427 | 2023-10-26 | 2022-07-20 | 2.4 | 3.19 | 2.52 | 2.5 | 0.006 | 0.93 | 5.0 | 0.05 | 15.25 | 0.01 | 1.296 | 4.14 | 2.04 | 3.7 | 96.2 | 0.1 | -0.44 | 0.92 | 0.89 | 3.34 | 2.6 | 0.004 | 0.62 | 1.0 | 0.04 | 15.44 | 0.00 | 1.924 | 8.84 | 1.90 | 4.4 | 95.6 | 0.0 | 0.48 | 0.47 | 0.94 | 0.93 | 3.40 | 149706 | 9204 | 68 | 3640 | 41 | 0 | 0 | logfile |
✔ | 6GSi | 0056 | 2023-10-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 13.38 | 0.00 | 1.857 | 12.45 | 0.26 | 9.9 | 90.0 | 0.1 | -2.57 | 0.96 | 0.57 | 0.84 | 2.77 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✔ | 5L3P | 4001 | 2023-10-25 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.34 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.004 | 0.98 | 0.0 | 0.05 | 18.80 | 0.01 | 1.829 | 40.64 | 0.54 | 9.8 | 89.5 | 0.6 | -2.79 | 2.44 | 0.68 | 0.44 | 0.07 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 7K50 | 22669 | 2023-10-25 | 2020-09-16 | 3.4 | 3.90 | — | 3.3 | 0.010 | 1.13 | 0.0 | 0.09 | 14.54 | 0.01 | 2.194 | 19.55 | 1.75 | 13.3 | 85.0 | 1.7 | -4.02 | 0.85 | 0.84 | 1.47 | 3.3 | 0.006 | 0.76 | 0.0 | 0.04 | 16.10 | 0.01 | 1.973 | 20.20 | 0.86 | 14.2 | 85.5 | 0.3 | -2.60 | 1.19 | 0.86 | 0.86 | 0.84 | 149700 | 5945 | 60 | 4811 | 0 | 0 | 0 | logfile |
✔ | 8FL7 | 29269 | 2023-10-25 | 2022-12-21 | 2.55 | 2.80 | 2.68 | 2.9 | 0.007 | 0.74 | 0.0 | 0.04 | 13.38 | 0.03 | 1.958 | 2.09 | 0.01 | 1.3 | 98.7 | 0.0 | 0.88 | 0.86 | 0.86 | 4.06 | 2.9 | 0.004 | 0.72 | 0.0 | 0.04 | 15.02 | 0.01 | 1.900 | 5.25 | 1.42 | 2.0 | 98.0 | 0.0 | 1.11 | 0.44 | 0.85 | 0.87 | 3.66 | 149506 | 8711 | 69 | 3684 | 95 | 0 | 0 | logfile |
✔ | 5U4i | 8505 | 2023-10-25 | 2016-12-04 | 3.5 | 3.09 | 3.83 | 3.7 | 0.007 | 1.17 | 41.0 | 0.10 | 18.54 | 0.02 | 1.386 | 8.56 | 8.19 | 6.4 | 92.7 | 0.8 | -1.32 | 0.60 | 0.74 | 0.22 | 3.0 | 0.005 | 0.85 | 0.0 | 0.04 | 18.94 | 0.01 | 1.667 | 34.85 | 1.11 | 7.8 | 92.0 | 0.1 | -2.24 | 1.93 | 0.63 | 0.74 | 0.33 | 149495 | 6159 | 61 | 4715 | 125 | 0 | 0 | logfile |
✔ | 7K53 | 22672 | 2023-10-25 | 2020-09-16 | 3.2 | 3.74 | — | 3.1 | 0.009 | 1.10 | 0.0 | 0.09 | 14.39 | 0.01 | 1.865 | 18.16 | 1.50 | 14.1 | 84.8 | 1.1 | -3.74 | 0.87 | 0.85 | 1.69 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.69 | 0.00 | 1.995 | 15.30 | 0.72 | 10.8 | 89.1 | 0.1 | -2.21 | 0.52 | 0.88 | 0.87 | 1.47 | 149698 | 5945 | 60 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WDi | 21637 | 2023-10-25 | 2020-03-31 | 4.0 | 4.30 | 4.79 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 13.16 | 0.01 | 2.280 | 9.88 | 0.49 | 12.5 | 85.9 | 1.6 | -4.84 | 0.77 | 0.71 | — | 4.1 | 0.004 | 0.80 | 0.0 | 0.04 | 17.24 | 0.01 | 1.919 | 31.49 | 0.97 | 12.3 | 87.5 | 0.1 | -3.19 | 1.60 | 0.81 | 0.75 | — | 149628 | 5954 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 5MDW | 3490 | 2023-10-25 | 2016-11-13 | 3.06 | 3.16 | 3.07 | 3.1 | 0.009 | 1.33 | 26.0 | 0.11 | 16.56 | 0.02 | 1.464 | 3.52 | 7.69 | 5.6 | 93.9 | 0.5 | -1.97 | 0.81 | 0.89 | 2.64 | 3.1 | 0.008 | 0.75 | 0.0 | 0.04 | 15.70 | 0.01 | 1.792 | 7.84 | 0.58 | 4.2 | 95.7 | 0.0 | -0.26 | 1.16 | 0.83 | 0.89 | 2.61 | 149607 | 6346 | 67 | 4638 | 440 | 2 | 0 | logfile |
✔ | 8FKV | 29258 | 2023-10-25 | 2022-12-21 | 2.47 | 2.71 | 2.57 | 2.7 | 0.003 | 0.53 | 0.0 | 0.03 | 12.66 | 0.00 | 1.957 | 1.78 | 0.00 | 1.1 | 98.9 | 0.0 | 2.08 | 0.80 | 0.83 | 3.64 | 1.6 | 0.004 | 0.57 | 0.0 | 0.04 | 14.24 | 0.00 | 1.912 | 4.98 | 1.13 | 1.9 | 98.1 | 0.0 | 1.72 | 0.42 | 0.82 | 0.87 | 3.36 | 148975 | 12248 | 71 | 2435 | 70 | 0 | 0 | logfile |
✔ | 7SS9 | 25405 | 2023-10-25 | 2021-11-10 | 3.9 | 4.09 | 4.66 | 4.0 | 0.010 | 1.07 | 0.0 | 0.09 | 16.35 | 0.01 | 2.130 | 12.90 | 1.63 | 11.7 | 87.8 | 0.5 | -4.79 | 0.76 | 0.73 | 0.63 | 4.0 | 0.006 | 0.90 | 0.0 | 0.04 | 18.44 | 0.01 | 1.953 | 32.54 | 1.75 | 14.4 | 85.4 | 0.3 | -3.33 | 0.69 | 0.77 | 0.73 | 0.62 | 149808 | 6171 | 57 | 4736 | 0 | 0 | 0 | logfile |
✔ | 7UNR | 26630 | 2023-10-25 | 2022-04-11 | 2.9 | 3.18 | 2.93 | 3.1 | 0.005 | 0.64 | 2.0 | 0.04 | 14.92 | 0.02 | 1.879 | 6.56 | 0.26 | 7.2 | 92.4 | 0.4 | -1.63 | 0.79 | 0.88 | 3.11 | 3.1 | 0.005 | 0.70 | 0.0 | 0.04 | 15.79 | 0.01 | 1.760 | 6.87 | 3.30 | 7.9 | 91.7 | 0.4 | -1.18 | 0.26 | 0.79 | 0.89 | 2.86 | 149327 | 6502 | 82 | 4606 | 632 | 200 | 0 | logfile |
✔ | 7MT7 | 23976 | 2023-10-25 | 2021-05-13 | 2.71 | 2.43 | — | 2.8 | 0.007 | 0.86 | 0.0 | 0.05 | 14.11 | 0.01 | 2.026 | 2.68 | 0.17 | 6.3 | 93.6 | 0.1 | -4.19 | 0.87 | 0.87 | 3.93 | 2.8 | 0.007 | 0.68 | 0.0 | 0.04 | 14.47 | 0.01 | 1.826 | 5.61 | 2.09 | 6.0 | 93.9 | 0.1 | -0.77 | 0.44 | 0.86 | 0.88 | 3.21 | 149696 | 5629 | 71 | 4912 | 449 | 0 | 0 | logfile |