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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HXZ | 0298 | 2023-10-16 | 2018-10-18 | 4.1 | 4.12 | 3.30 | 4.1 | 0.008 | 1.04 | 0.0 | 0.06 | 11.58 | 0.01 | 2.476 | 0.35 | 1.95 | 13.3 | 86.7 | 0.0 | -5.83 | 0.63 | 0.83 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 13.24 | 0.01 | 2.158 | 9.13 | 0.00 | 9.2 | 90.8 | 0.0 | -2.43 | 0.90 | 0.63 | 0.82 | — | 34008 | 4224 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ooY | 17033 | 2023-10-03 | 2023-04-06 | 4.0 | 3.79 | 3.92 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 19.97 | 0.00 | 2.016 | 12.57 | 0.79 | 5.1 | 94.9 | 0.0 | -0.97 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5828 | 604 | 5 | 51 | 1 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2023-10-07 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✔ | 7Ro3 | 24586 | 2023-10-13 | 2021-07-30 | 4.8 | 4.78 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.05 | 12.47 | 0.01 | 2.358 | 11.99 | 1.33 | 4.3 | 95.7 | 0.0 | 1.70 | 0.67 | 0.84 | — | 4.4 | 0.005 | 1.03 | 0.0 | 0.05 | 11.66 | 0.01 | 2.227 | 24.92 | 0.00 | 6.5 | 93.5 | 0.0 | 0.29 | 2.18 | 0.68 | 0.84 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oiF | 20076 | 2023-10-05 | 2019-04-09 | 4.4 | 4.70 | — | 4.6 | 0.008 | 1.21 | 0.0 | 0.05 | 9.73 | 0.01 | 1.596 | 6.18 | 0.00 | 11.4 | 88.6 | 0.0 | -4.69 | 0.65 | 0.66 | — | 4.6 | 0.003 | 0.58 | 0.0 | 0.04 | 11.89 | 0.00 | 1.877 | 18.55 | 0.00 | 7.5 | 92.5 | 0.0 | -1.44 | 1.69 | 0.68 | 0.77 | — | 115025 | 7050 | 49 | 0 | 25 | 0 | 56750 | logfile |
✔ | 6WL0 | 21814 | 2023-10-05 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.04 | 14.65 | 0.00 | 2.062 | 21.77 | 0.18 | 0.1 | 99.9 | 0.0 | 0.14 | 1.67 | 0.79 | 0.86 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N2P | 9332 | 2023-10-07 | 2018-11-13 | 4.0 | 4.78 | — | 4.2 | 0.009 | 0.87 | 0.0 | 0.04 | 7.86 | 0.01 | 2.203 | 7.41 | 0.00 | 12.8 | 87.2 | 0.0 | -4.67 | 0.58 | 0.72 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 10.57 | 0.00 | 2.170 | 7.41 | 0.00 | 9.3 | 90.7 | 0.0 | 0.33 | 1.38 | 0.59 | 0.82 | — | 14570 | 880 | 10 | 0 | 0 | 0 | 7380 | logfile |
✔ | 5oDV | 3785 | 2023-10-14 | 2017-07-06 | 4.0 | 4.43 | 4.14 | 4.4 | 0.008 | 0.80 | 0.0 | 0.05 | 10.27 | 0.01 | 1.941 | 6.34 | 0.00 | 13.2 | 86.8 | 0.0 | -4.48 | 0.50 | 0.73 | — | 4.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.12 | 0.00 | 1.979 | 7.84 | 0.32 | 5.5 | 94.5 | 0.0 | -1.95 | 1.13 | 0.53 | 0.81 | — | 82656 | 4968 | 48 | 120 | 0 | 0 | 40368 | logfile |
✔ | 6WL9 | 21818 | 2023-10-11 | 2020-04-18 | 4.2 | 4.68 | — | 4.4 | 0.006 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.052 | 24.33 | 0.00 | 1.9 | 98.1 | 0.0 | 1.21 | 0.74 | 0.87 | — | 4.4 | 0.004 | 0.85 | 0.0 | 0.05 | 13.42 | 0.00 | 2.210 | 16.90 | 0.05 | 0.0 | 100.0 | 0.0 | 2.71 | 0.97 | 0.73 | 0.86 | — | 23400 | 3016 | 104 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YRN | 6842 | 2023-10-04 | 2017-11-09 | 4.1 | 3.09 | 3.51 | 6.7 | 0.007 | 1.00 | 0.0 | 0.05 | 10.65 | 0.00 | 2.371 | 8.18 | 0.00 | 4.7 | 95.3 | 0.0 | -3.39 | 0.53 | 0.56 | — | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 14.84 | 0.00 | 2.072 | 25.93 | 0.00 | 3.0 | 97.0 | 0.0 | -0.84 | 2.91 | 0.63 | 0.79 | — | 8280 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DST | 27688 | 2023-10-02 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2023-10-03 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.005 | 0.58 | 0.0 | 0.03 | 11.10 | 0.00 | 2.001 | 10.39 | 0.00 | 1.7 | 98.3 | 0.0 | 1.61 | 1.51 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6WL1 | 21815 | 2023-10-07 | 2020-04-17 | 4.0 | 4.02 | — | 4.0 | 0.007 | 0.81 | 0.0 | 0.05 | 7.85 | 0.00 | 2.413 | 3.17 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.71 | 0.85 | — | 4.0 | 0.004 | 0.51 | 0.0 | 0.04 | 16.18 | 0.00 | 2.241 | 6.67 | 0.67 | 0.0 | 100.0 | 0.0 | 6.23 | 0.72 | 0.72 | 0.86 | — | 14612 | 1872 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KYH | 8298 | 2023-10-18 | 2016-07-21 | 4.0 | 3.99 | — | 4.2 | 0.014 | 1.82 | 0.0 | 0.11 | 11.44 | 0.01 | 1.692 | 34.34 | 3.90 | 2.5 | 96.2 | 1.3 | -0.68 | 0.47 | 0.78 | — | 4.1 | 0.004 | 0.78 | 0.0 | 0.05 | 15.11 | 0.00 | 2.096 | 10.89 | 0.39 | 5.7 | 94.3 | 0.0 | 0.01 | 1.73 | 0.47 | 0.79 | — | 38892 | 5082 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YX3 | 14353 | 2023-10-16 | 2022-02-15 | 4.0 | 3.15 | 3.42 | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 15.05 | 0.00 | 1.650 | 14.33 | 0.61 | 4.8 | 95.2 | 0.0 | -0.90 | 0.44 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 91116 | 11682 | 36 | 0 | 18 | 0 | 0 | logfile |
✔ | 8D9M | 27266 | 2023-10-08 | 2022-06-10 | 4.2 | 3.57 | 4.20 | 3.3 | 0.007 | 1.02 | 0.0 | 0.05 | 16.46 | 0.01 | 1.684 | 31.57 | 0.45 | 17.2 | 82.8 | 0.0 | -2.61 | 0.83 | 0.80 | — | 3.3 | 0.005 | 0.92 | 0.0 | 0.05 | 16.46 | 0.00 | 1.674 | 16.97 | 0.00 | 14.3 | 85.7 | 0.0 | -2.64 | 0.67 | 0.82 | 0.79 | — | 15967 | 1806 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 7KZN | 23083 | 2023-10-15 | 2020-12-10 | 4.0 | 2.94 | — | 2.2 | 0.010 | 1.36 | 7.0 | 0.07 | 14.78 | 0.01 | 2.202 | 10.83 | 0.48 | 10.0 | 89.8 | 0.2 | -3.22 | 0.70 | 0.67 | — | 2.2 | 0.005 | 0.81 | 0.0 | 0.05 | 16.48 | 0.00 | 2.107 | 15.81 | 0.71 | 8.8 | 91.1 | 0.1 | -1.41 | 1.46 | 0.68 | 0.64 | — | 31205 | 4099 | 19 | 0 | 289 | 0 | 0 | logfile |
✔ | 6TH3 | 10502 | 2023-10-05 | 2019-11-18 | 4.0 | 4.17 | 4.09 | 4.0 | 0.007 | 1.10 | 0.0 | 0.05 | 10.47 | 0.01 | 2.268 | 4.52 | 0.00 | 16.5 | 83.5 | 0.0 | -5.42 | 0.64 | 0.56 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 15.42 | 0.01 | 2.181 | 11.71 | 0.66 | 13.5 | 86.5 | 0.0 | -1.92 | 1.67 | 0.74 | 0.78 | — | 60600 | 7800 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ro4 | 24587 | 2023-10-13 | 2021-07-30 | 4.3 | 4.51 | — | 4.2 | 0.006 | 0.78 | 0.0 | 0.05 | 13.23 | 0.01 | 2.237 | 17.04 | 4.00 | 5.4 | 94.6 | 0.0 | 0.68 | 0.68 | 0.85 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 11.12 | 0.01 | 2.104 | 13.80 | 0.01 | 6.1 | 93.9 | 0.0 | 1.92 | 0.60 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL8 | 21817 | 2023-10-11 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 14.66 | 0.00 | 2.189 | 14.23 | 0.00 | 0.4 | 99.6 | 0.0 | 3.52 | 1.84 | 0.74 | 0.86 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |