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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HF1 | 34708 | 2023-10-19 | 2022-11-09 | 3.7 | 4.36 | 4.14 | 4.0 | 0.004 | 0.64 | 0.0 | 0.04 | 13.96 | 0.00 | 1.893 | 14.18 | 0.02 | 4.8 | 95.2 | 0.0 | -0.15 | 0.80 | 0.79 | 0.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42379 | 5075 | 13 | 60 | 0 | 0 | 0 | logfile |
✘ | 7YVL | 34131 | 2023-10-02 | 2022-08-19 | 3.3 | 3.44 | 3.21 | 3.4 | 0.011 | 1.16 | 5.0 | 0.07 | 12.98 | 0.01 | 2.155 | 18.66 | 1.42 | 9.0 | 90.6 | 0.5 | -4.93 | 0.57 | 0.77 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3224 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TU7 | 10590 | 2023-10-11 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8DFC | 27404 | 2023-10-10 | 2022-06-21 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20713 | 2548 | 18 | 0 | 15 | 483 | 0 | logfile |
✘ | 7PKQ | 13477 | 2023-10-10 | 2021-08-26 | 4.2 | 4.26 | 4.62 | 4.1 | 0.009 | 1.42 | 20.0 | 0.08 | 17.46 | 0.01 | 2.123 | 9.00 | 0.89 | 6.0 | 93.8 | 0.3 | -2.71 | 0.63 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70313 | 4968 | 44 | 1114 | 1722 | 0 | 0 | logfile |
✘ | 7NJ3 | 12371 | 2023-10-14 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 13.64 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 8i5X | 35197 | 2023-10-06 | 2023-01-26 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13590 | 1565 | 8 | 0 | 35 | 0 | 0 | logfile |
✘ | 8i5B | 35193 | 2023-10-06 | 2023-01-24 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13440 | 1563 | 8 | 0 | 30 | 0 | 0 | logfile |
✘ | 8i5Y | 35198 | 2023-10-06 | 2023-01-26 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13617 | 1565 | 9 | 0 | 39 | 6 | 0 | logfile |
✘ | 7Yi2 | 33849 | 2023-10-06 | 2022-07-14 | 3.4 | 2.75 | 3.37 | 2.7 | 0.003 | 0.59 | 0.0 | 0.04 | 18.17 | 0.01 | 2.062 | 9.71 | 0.23 | 6.9 | 93.1 | 0.0 | -0.99 | 0.75 | 0.77 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12140 | 1397 | 9 | 33 | 5 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-10-10 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2023-10-03 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |
✘ | 8i6S | 35205 | 2023-10-04 | 2023-01-29 | 4.4 | 4.82 | 4.39 | 4.4 | 0.006 | 1.39 | 2.0 | 0.06 | 15.97 | 0.01 | 2.073 | 4.55 | 0.97 | 4.1 | 95.7 | 0.2 | -5.18 | 0.73 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8641 | 1125 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 8DUL | 27722 | 2023-10-07 | 2022-07-27 | 4.17 | 4.34 | 4.24 | 4.7 | 0.005 | 1.04 | 0.0 | 0.07 | 13.22 | 0.02 | 2.317 | 6.11 | 0.06 | 5.3 | 94.7 | 0.0 | -2.03 | 0.56 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14203 | 1802 | 15 | 0 | 10 | 0 | 0 | logfile |
✘ | 7YSW | 34084 | 2023-10-06 | 2022-08-13 | 3.03 | 3.51 | 3.06 | 3.4 | 0.007 | 1.01 | 0.0 | 0.20 | 16.78 | 0.00 | 1.948 | 10.59 | 4.77 | 6.4 | 93.6 | 0.0 | -1.74 | 0.76 | 0.80 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12407 | 1517 | 7 | 0 | 12 | 0 | 0 | logfile |
✘ | 8oiP | 16895 | 2023-10-11 | 2023-03-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72369 | 6162 | 47 | 1041 | 144 | 3 | 0 | logfile |
✘ | 8C29 | 16389 | 2023-10-10 | 2022-12-21 | 2.785 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71174 | 6772 | 117 | 0 | 358 | 280 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-10-08 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 8S8Z | 40232 | 2023-10-08 | 2023-03-27 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15707 | 2096 | 16 | 0 | 9 | 0 | 0 | logfile |
✘ | 8FCA | 28978 | 2023-10-17 | 2022-12-01 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35936 | 2400 | 8 | 0 | 8 | 0 | 17476 | logfile |