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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6oo7 | 20148 | 2023-10-08 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 9.52 | 0.01 | 2.273 | 4.27 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7EZ2 | 31386 | 2023-10-04 | 2021-06-01 | 3.05 | 2.80 | — | 3.0 | 0.005 | 0.56 | 0.0 | 0.03 | 13.92 | 0.00 | 1.809 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.69 | 0.81 | — | 3.0 | 0.007 | 0.85 | 0.0 | 0.05 | 15.77 | 0.01 | 1.757 | 7.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.04 | 0.73 | 0.89 | — | 8698 | 0 | 3 | 406 | 31 | 0 | 0 | logfile |
✘ | 7YJ4 | 33871 | 2023-10-04 | 2022-07-19 | 3.19 | 3.39 | 3.21 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 14.73 | 0.01 | 2.175 | 9.63 | 1.55 | 5.5 | 94.4 | 0.1 | -0.72 | 0.60 | 0.73 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8985 | 1154 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VAD | 21137 | 2023-10-12 | 2019-12-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37613 | 2321 | 2 | 0 | 0 | 0 | 19096 | logfile |
✔ | 7XD4 | 33135 | 2023-10-04 | 2022-03-26 | 3.89 | 4.13 | — | 3.8 | 0.003 | 0.59 | 0.0 | 0.03 | 15.73 | 0.00 | 1.880 | 1.73 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.73 | — | 3.8 | 0.007 | 0.78 | 0.0 | 0.04 | 17.52 | 0.01 | 1.755 | 18.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.84 | 0.87 | 0.78 | — | 9062 | 0 | 1 | 423 | 28 | 0 | 0 | logfile |
✘ | 7SAX | 24958 | 2023-10-03 | 2021-09-23 | 3.0 | 2.60 | 2.97 | 3.0 | 0.007 | 0.66 | 0.0 | 0.04 | 13.54 | 0.00 | 2.174 | 5.46 | 0.00 | 3.3 | 96.7 | 0.0 | 1.22 | 0.58 | 0.85 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5305 | 689 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AHE | 11784 | 2023-10-05 | 2020-09-24 | 4.1 | 4.22 | 4.11 | 4.1 | 0.009 | 1.23 | 0.0 | 0.09 | 12.74 | 0.00 | 2.205 | 16.70 | 0.45 | 9.6 | 90.4 | 0.0 | -5.40 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10060 | 1308 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZDC | 14642 | 2023-10-04 | 2022-03-29 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8960 | 1147 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6VAF | 21139 | 2023-10-14 | 2019-12-17 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41243 | 2429 | 5 | 58 | 0 | 0 | 20677 | logfile |
✘ | 7B5P | 12043 | 2023-10-11 | 2020-12-05 | 3.2 | 3.34 | — | 3.3 | 0.009 | 1.00 | 1.0 | 0.06 | 13.44 | 0.00 | 1.894 | 24.69 | 1.78 | 8.9 | 89.6 | 1.4 | -2.84 | 0.70 | 0.83 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22527 | 3013 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y6i | 33641 | 2023-10-03 | 2022-06-20 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8176 | 938 | 8 | 0 | 37 | 6 | 0 | logfile |
✘ | 7EW0 | 31343 | 2023-10-05 | 2021-05-24 | 3.42 | 4.10 | — | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 14.13 | 0.00 | 2.087 | 6.86 | 0.71 | 2.9 | 97.1 | 0.0 | -1.47 | 0.59 | 0.76 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8987 | 1142 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6CMX | 7526 | 2023-10-05 | 2018-03-06 | 3.1 | 3.31 | — | 3.3 | 0.009 | 1.01 | 0.0 | 0.14 | 10.09 | 0.01 | 1.638 | 21.48 | 1.51 | 9.6 | 90.2 | 0.2 | -3.85 | 0.72 | 0.76 | 3.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10139 | 1300 | 4 | 0 | 17 | 0 | 0 | logfile |
✘ | 8EFQ | 28088 | 2023-10-03 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.12 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7RH7 | 24457 | 2023-10-17 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93207 | 6072 | 44 | 0 | 64 | 0 | 44381 | logfile |
✘ | 3JC7 | 6536 | 2023-10-19 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2023-10-02 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✘ | 6LHS | 0896 | 2023-10-11 | 2019-12-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22737 | 1456 | 2 | 0 | 0 | 0 | 11313 | logfile |
✘ | 3JC5 | 6535 | 2023-10-19 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6AHU | 9627 | 2023-10-14 | 2018-08-20 | 3.66 | 3.79 | — | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 11.49 | 0.01 | 2.284 | 4.88 | 0.09 | 9.8 | 89.9 | 0.2 | -5.26 | 0.74 | 0.67 | 0.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29386 | 2595 | 14 | 413 | 1 | 0 | 0 | logfile |