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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HV9 | 0288 | 2023-10-20 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.30 | 0.00 | 2.086 | 16.13 | 0.02 | 8.1 | 91.8 | 0.1 | -1.67 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-10-08 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 7YMY | 33947 | 2023-10-13 | 2022-07-29 | 4.96 | 9.09 | 5.33 | 5.2 | 0.006 | 0.96 | 3.0 | 0.06 | 14.84 | 0.01 | 2.203 | 11.52 | 0.50 | 8.6 | 91.2 | 0.2 | -2.07 | 0.89 | 0.80 | — | 5.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 2.089 | 23.94 | 0.00 | 7.7 | 92.3 | 0.0 | -1.43 | 1.24 | 0.91 | 0.85 | — | 27677 | 3498 | 15 | 0 | 46 | 0 | 0 | logfile |
✔ | 8ET2 | 28584 | 2023-10-20 | 2022-10-15 | 4.96 | 5.56 | 5.14 | 5.6 | 0.004 | 1.00 | 0.0 | 0.05 | 13.70 | 0.01 | 1.879 | 23.18 | 0.00 | 11.7 | 88.3 | 0.0 | -4.06 | 0.69 | 0.49 | — | 5.5 | 0.003 | 0.71 | 0.0 | 0.05 | 13.57 | 0.00 | 1.760 | 17.17 | 0.00 | 8.9 | 91.1 | 0.0 | -3.48 | 0.62 | 0.68 | 0.48 | — | 43584 | 5304 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-10-14 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✘ | 8HKV | 34861 | 2023-10-19 | 2022-11-28 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 8C95 | 16502 | 2023-10-19 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.75 | 0.0 | 0.04 | 17.49 | 0.01 | 1.903 | 47.96 | 0.00 | 10.0 | 90.0 | 0.0 | -2.00 | 1.97 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 6oCE | 20017 | 2023-10-05 | 2019-03-23 | 4.9 | 4.11 | — | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 8.07 | 0.01 | 1.868 | 8.56 | 0.00 | 9.9 | 90.1 | 0.0 | -4.37 | 0.45 | 0.60 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 12.52 | 0.01 | 2.176 | 12.97 | 0.00 | 12.3 | 87.7 | 0.0 | -2.82 | 1.19 | 0.46 | 0.63 | — | 11228 | 1378 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EYY | 28724 | 2023-10-10 | 2022-10-29 | 4.9 | 6.21 | 5.32 | 4.3 | 0.003 | 0.58 | 0.0 | 0.04 | 12.98 | 0.00 | 2.165 | 21.05 | 0.06 | 7.2 | 92.6 | 0.2 | -1.16 | 0.89 | 0.81 | — | 4.3 | 0.002 | 0.57 | 0.0 | 0.04 | 13.19 | 0.00 | 2.184 | 20.45 | 0.00 | 6.9 | 93.1 | 0.1 | -1.01 | 1.12 | 0.90 | 0.84 | — | 14301 | 1773 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2023-10-05 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.45 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 14.11 | 0.00 | 2.177 | 19.89 | 0.00 | 4.1 | 95.9 | 0.0 | 0.32 | 1.01 | 0.69 | 0.78 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2023-10-03 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 6.37 | 0.00 | 2.094 | 19.59 | 0.00 | 7.2 | 92.8 | 0.0 | -0.38 | 1.57 | 0.61 | 0.59 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-10-06 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2023-10-05 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.73 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.79 | 0.0 | 0.05 | 14.59 | 0.01 | 2.170 | 16.48 | 0.00 | 4.4 | 95.0 | 0.6 | 0.64 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CCR | 30340 | 2023-10-14 | 2020-06-17 | 4.9 | 6.57 | — | 4.8 | 0.007 | 0.96 | 0.0 | 0.06 | 24.75 | 0.01 | 1.593 | 7.02 | 0.11 | 4.4 | 95.6 | 0.0 | -2.64 | 0.83 | 0.67 | — | 4.8 | 0.005 | 0.71 | 0.0 | 0.04 | 27.52 | 0.01 | 2.033 | 28.06 | 0.00 | 5.6 | 94.4 | 0.0 | -0.20 | 1.56 | 0.88 | 0.77 | — | 29722 | 2202 | 22 | 588 | 0 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2023-10-05 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 5.90 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.002 | 0.55 | 0.0 | 0.04 | 12.94 | 0.00 | 1.896 | 13.82 | 0.00 | 5.6 | 94.4 | 0.0 | 0.05 | 1.20 | 0.82 | 0.68 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 7STi | 25429 | 2023-10-08 | 2021-11-13 | 4.9 | 6.34 | — | 4.3 | 0.004 | 0.67 | 0.0 | 0.04 | 13.50 | 0.00 | 2.001 | 25.75 | 0.20 | 7.8 | 92.0 | 0.2 | -1.35 | 0.89 | 0.83 | — | 4.3 | 0.004 | 0.65 | 0.0 | 0.04 | 13.42 | 0.00 | 2.110 | 26.65 | 0.00 | 9.2 | 90.6 | 0.2 | -1.29 | 1.61 | 0.89 | 0.84 | — | 13531 | 1678 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EJ5 | 28176 | 2023-10-03 | 2022-09-16 | 4.9 | 4.58 | 4.63 | 4.6 | 0.012 | 1.52 | 1.0 | 0.09 | 12.69 | 0.01 | 2.466 | 13.82 | 3.27 | 2.0 | 97.2 | 0.8 | 1.40 | 0.43 | 0.64 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 14.35 | 0.00 | 2.123 | 17.17 | 0.00 | 4.2 | 95.5 | 0.3 | -0.12 | 2.26 | 0.46 | 0.75 | — | 5818 | 727 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMV | 4083 | 2023-10-04 | 2016-08-01 | 4.9 | 6.86 | 6.64 | 6.7 | 0.008 | 1.34 | 34.0 | 0.11 | 20.14 | 0.01 | 0.977 | 14.22 | 15.18 | 9.6 | 87.9 | 2.5 | -1.98 | 0.70 | 0.58 | — | 6.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.73 | 0.01 | 2.048 | 27.68 | 0.00 | 6.8 | 92.7 | 0.5 | -1.55 | 2.19 | 0.77 | 0.75 | — | 59470 | 3124 | 30 | 1612 | 4 | 0 | 0 | logfile |
✔ | 7PTL | 13630 | 2023-10-11 | 2021-09-27 | 4.9 | 10.06 | 4.95 | — | 0.005 | 1.01 | 0.0 | 0.06 | 16.11 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.007 | 0.89 | 0.0 | 0.04 | 21.14 | 0.01 | 1.735 | 83.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.49 | 0.92 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 5U8T | 8519 | 2023-10-19 | 2016-12-15 | 4.9 | 5.42 | — | 5.0 | 0.008 | 1.57 | 0.0 | 0.06 | 15.87 | 0.01 | 1.737 | 40.31 | 8.25 | 10.1 | 88.9 | 1.0 | -4.31 | 0.87 | 0.80 | — | 4.9 | 0.003 | 0.89 | 0.0 | 0.05 | 14.25 | 0.00 | 2.049 | 23.61 | 0.04 | 8.8 | 90.2 | 1.0 | -1.29 | 0.90 | 0.87 | 0.81 | — | 40788 | 5089 | 15 | 14 | 3 | 0 | 0 | logfile |