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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PM8 | 13524 | 2024-01-19 | 2021-09-02 | 3.5 | 3.91 | 3.50 | 3.4 | 0.004 | 0.88 | 1.0 | 0.05 | 15.70 | 0.01 | 1.316 | 6.40 | 0.09 | 0.3 | 99.7 | 0.0 | -1.60 | 0.90 | 0.83 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 8T1o | 40973 | 2024-01-20 | 2023-06-02 | 3.3 | 3.56 | 3.30 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.78 | 0.00 | 2.146 | 8.73 | 0.00 | 3.0 | 96.9 | 0.1 | 0.93 | 0.60 | 0.69 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13800 | 1727 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8HPN | 34934 | 2024-01-19 | 2022-12-12 | 4.55 | 5.06 | 4.53 | 6.7 | 0.012 | 1.81 | 6.0 | 0.14 | 13.65 | 0.01 | 2.243 | 7.50 | 0.35 | 7.3 | 92.5 | 0.2 | -2.64 | 0.72 | 0.80 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 12.53 | 0.00 | 2.165 | 12.84 | 0.09 | 4.6 | 95.3 | 0.1 | 0.11 | 0.85 | 0.72 | 0.81 | — | 12329 | 1707 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 8SA5 | 40265 | 2024-01-18 | 2023-03-31 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7649 | 0 | 4 | 345 | 2 | 0 | 0 | logfile |
✘ | 7PMA | 13526 | 2024-01-19 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 1.0 | 0.05 | 15.93 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 8JT9 | 36637 | 2024-01-17 | 2023-06-21 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2872 | 384 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-01-17 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.83 | 0.00 | 2.209 | 8.20 | 2.40 | 4.7 | 95.3 | 0.0 | -1.74 | 1.40 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✘ | 8AZS | 15770 | 2024-01-18 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8S90 | 40233 | 2024-01-20 | 2023-03-27 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15323 | 2096 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 8SRM | 40735 | 2024-01-17 | 2023-05-05 | 4.46 | 5.07 | 4.47 | 4.4 | 0.003 | 0.51 | 0.0 | 0.03 | 4.38 | 0.00 | 2.233 | 4.32 | 0.00 | 4.0 | 96.0 | 0.0 | 2.57 | 0.82 | 0.84 | — | 4.3 | 0.006 | 0.64 | 0.0 | 0.04 | 5.47 | 0.00 | 2.070 | 5.40 | 0.00 | 7.2 | 92.8 | 0.0 | -0.25 | 1.59 | 0.83 | 0.86 | — | 5773 | 1163 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J1Q | 35930 | 2024-01-17 | 2023-04-13 | 3.3 | 4.10 | 3.20 | 3.9 | 0.030 | 1.93 | 0.0 | 0.05 | 28.59 | 0.00 | 2.043 | 8.92 | 0.28 | 7.1 | 92.9 | 0.0 | -1.02 | 0.73 | 0.64 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5447 | 427 | 5 | 90 | 1 | 0 | 0 | logfile |
✔ | 8KG8 | 37213 | 2024-01-19 | 2023-08-17 | 4.23 | 6.03 | 4.25 | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.46 | 0.00 | 1.997 | 13.72 | 0.01 | 4.1 | 95.9 | 0.0 | 0.19 | 0.84 | 0.78 | — | 4.2 | 0.002 | 0.56 | 0.0 | 0.04 | 14.33 | 0.00 | 1.938 | 16.39 | 0.03 | 4.9 | 95.1 | 0.0 | 0.25 | 1.20 | 0.86 | 0.83 | — | 63829 | 7950 | 25 | 25 | 17 | 0 | 0 | logfile |
✘ | 8i5Y | 35198 | 2024-01-20 | 2023-01-26 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13617 | 1565 | 9 | 0 | 39 | 6 | 0 | logfile |
✘ | 8i5X | 35197 | 2024-01-20 | 2023-01-26 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13590 | 1565 | 8 | 0 | 35 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2024-01-17 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |
✘ | 8E49 | 27884 | 2024-01-19 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.42 | 0.0 | 0.03 | 22.35 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✘ | 8i5B | 35193 | 2024-01-20 | 2023-01-24 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13440 | 1563 | 8 | 0 | 30 | 0 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-01-17 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 6XXE | 10648 | 2024-01-19 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JPo | 36485 | 2024-01-19 | 2023-06-12 | 3.4 | 3.43 | 3.16 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.94 | 0.00 | 2.267 | 6.38 | 0.00 | 2.8 | 97.2 | 0.0 | 0.44 | 0.75 | 0.90 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11476 | 1466 | 4 | 0 | 8 | 0 | 0 | logfile |