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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BWA | 30231 | 2024-01-19 | 2020-04-14 | 4.9 | 5.10 | 4.70 | 4.8 | 0.004 | 0.77 | 0.0 | 0.05 | 15.31 | 0.00 | 1.970 | 41.05 | 0.00 | 13.4 | 86.6 | 0.0 | -4.15 | 0.80 | 0.64 | — | 4.8 | 0.003 | 0.72 | 0.0 | 0.05 | 14.14 | 0.00 | 2.122 | 21.24 | 0.00 | 9.8 | 90.2 | 0.0 | -3.06 | 1.64 | 0.79 | 0.60 | — | 11670 | 1444 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FVX | 4323 | 2024-01-18 | 2018-03-05 | 4.9 | 4.97 | — | 4.9 | 0.036 | 3.46 | 834.0 | 0.21 | 17.38 | 0.03 | 1.000 | 2.06 | 2.81 | 5.4 | 92.9 | 1.7 | -2.42 | 0.52 | 0.59 | — | 4.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.61 | 0.00 | 1.899 | 20.44 | 0.02 | 4.6 | 95.3 | 0.2 | -0.67 | 1.27 | 0.55 | 0.77 | — | 110471 | 14020 | 53 | 0 | 12 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2024-01-19 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.45 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 14.10 | 0.00 | 2.273 | 14.29 | 0.00 | 4.1 | 95.9 | 0.0 | 0.88 | 0.92 | 0.68 | 0.78 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2024-01-17 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.03 | 16.46 | 0.00 | 2.358 | 8.83 | 0.00 | 6.7 | 93.3 | 0.0 | 0.64 | 3.59 | 0.60 | 0.73 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oSH | 17153 | 2024-01-17 | 2023-04-18 | 4.9 | 5.59 | 5.45 | 4.9 | 0.006 | 0.94 | 0.0 | 0.06 | 3.38 | 0.00 | 2.299 | 5.83 | 0.00 | 11.2 | 88.7 | 0.1 | -0.55 | 0.82 | 0.82 | — | 4.9 | 0.003 | 0.65 | 0.0 | 0.04 | 4.66 | 0.00 | 2.198 | 8.69 | 0.00 | 15.1 | 84.9 | 0.0 | -0.88 | 0.53 | 0.83 | 0.85 | — | 6770 | 1372 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EJ5 | 28176 | 2024-01-17 | 2022-09-16 | 4.9 | 4.58 | 4.63 | 4.6 | 0.012 | 1.52 | 1.0 | 0.09 | 12.69 | 0.01 | 2.466 | 13.82 | 3.27 | 2.0 | 97.2 | 0.8 | 1.40 | 0.43 | 0.64 | — | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 13.77 | 0.00 | 2.116 | 17.17 | 0.00 | 4.3 | 95.5 | 0.1 | 0.29 | 1.39 | 0.46 | 0.75 | — | 5818 | 727 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2024-01-19 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 5.90 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.002 | 0.55 | 0.0 | 0.04 | 12.95 | 0.00 | 1.911 | 11.79 | 0.00 | 4.7 | 95.3 | 0.0 | 0.22 | 1.22 | 0.78 | 0.52 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 3J1B | 5391 | 2024-01-19 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.73 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.04 | 15.02 | 0.01 | 2.166 | 12.44 | 0.00 | 5.0 | 94.4 | 0.6 | 0.88 | 2.24 | 0.78 | 0.68 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oSL | 17160 | 2024-01-20 | 2023-04-19 | 4.9 | 8.34 | 6.27 | 6.8 | 0.005 | 0.80 | 0.0 | 0.05 | 28.01 | 0.00 | 2.363 | 2.30 | 0.00 | 1.1 | 98.9 | 0.0 | -0.07 | 0.81 | 0.71 | — | 7.0 | 0.012 | 1.04 | 0.0 | 0.06 | 35.58 | 0.01 | 1.810 | 186.47 | 0.00 | 13.0 | 86.5 | 0.5 | -2.30 | 3.51 | 0.87 | 0.83 | — | 13541 | 1441 | 14 | 294 | 0 | 0 | 301 | logfile |
✔ | 7S0E | 24788 | 2024-01-18 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.004 | 0.79 | 0.0 | 0.05 | 12.96 | 0.01 | 2.080 | 22.56 | 0.00 | 10.5 | 89.3 | 0.2 | -1.99 | 1.17 | 0.78 | 0.73 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SKM | 10228 | 2024-01-19 | 2019-08-16 | 4.9 | 5.09 | 4.66 | 4.9 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.449 | 9.83 | 0.18 | 1.4 | 98.6 | 0.0 | -1.03 | 0.68 | 0.74 | — | 4.9 | 0.004 | 0.77 | 0.0 | 0.05 | 13.13 | 0.01 | 2.154 | 20.23 | 0.18 | 3.2 | 96.8 | 0.0 | 0.23 | 2.74 | 0.70 | 0.80 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-01-17 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 24.84 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 4.9 | 0.010 | 1.23 | 0.0 | 0.06 | 26.31 | 0.01 | 1.966 | 57.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6oCE | 20017 | 2024-01-19 | 2019-03-23 | 4.9 | 4.11 | — | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 8.07 | 0.01 | 1.868 | 8.56 | 0.00 | 9.9 | 90.1 | 0.0 | -4.37 | 0.45 | 0.60 | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.04 | 12.27 | 0.01 | 2.249 | 11.38 | 0.00 | 12.6 | 87.4 | 0.0 | -2.49 | 1.76 | 0.46 | 0.62 | — | 11228 | 1378 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2024-01-17 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 6.37 | 0.00 | 2.094 | 19.59 | 0.00 | 7.2 | 92.8 | 0.0 | -0.38 | 1.57 | 0.61 | 0.59 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MoA | 23922 | 2024-01-19 | 2021-05-01 | 4.9 | 4.75 | — | 4.0 | 0.011 | 1.37 | 0.0 | 0.08 | 22.29 | 0.01 | 1.983 | 27.58 | 10.24 | 8.6 | 91.0 | 0.5 | -1.69 | 0.83 | 0.76 | — | 3.9 | 0.005 | 0.86 | 0.0 | 0.05 | 14.38 | 0.01 | 2.091 | 31.75 | 0.00 | 8.6 | 91.4 | 0.0 | -1.93 | 1.83 | 0.84 | 0.80 | — | 12511 | 1580 | 5 | 0 | 12 | 0 | 0 | logfile |
✔ | 5LMV | 4083 | 2024-01-18 | 2016-08-01 | 4.9 | 6.86 | 6.64 | 6.7 | 0.008 | 1.34 | 34.0 | 0.11 | 25.56 | 0.01 | 0.977 | 14.22 | 15.18 | 9.6 | 87.9 | 2.5 | -1.98 | 0.70 | 0.58 | — | 6.7 | 0.003 | 0.73 | 0.0 | 0.04 | 23.58 | 0.01 | 1.982 | 29.59 | 0.00 | 7.4 | 92.2 | 0.4 | -1.63 | 2.20 | 0.77 | 0.76 | — | 59470 | 3124 | 30 | 1612 | 4 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2024-01-19 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 6Q0J | 20550 | 2024-01-18 | 2019-08-01 | 4.9 | 4.69 | — | 4.1 | 0.012 | 1.53 | 3.0 | 0.09 | 8.72 | 0.00 | 2.229 | 2.10 | 0.00 | 5.4 | 93.3 | 1.3 | -2.84 | 0.74 | 0.63 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 8.51 | 0.00 | 1.946 | 5.63 | 0.00 | 6.2 | 93.4 | 0.4 | 0.10 | 1.61 | 0.85 | 0.79 | — | 8213 | 1633 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 7P2Q | 13172 | 2024-01-17 | 2021-07-06 | 4.9 | 4.54 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 11.20 | 0.01 | 2.264 | 4.17 | 0.00 | 5.0 | 95.0 | 0.0 | -3.09 | 0.77 | 0.72 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.05 | 12.77 | 0.00 | 2.155 | 14.82 | 0.00 | 5.5 | 94.5 | 0.0 | -0.87 | 1.78 | 0.80 | 0.75 | — | 4780 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2024-01-17 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.91 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.6 | 0.004 | 0.69 | 0.0 | 0.04 | 4.96 | 0.00 | 2.132 | 7.42 | 0.00 | 8.6 | 91.4 | 0.0 | -0.31 | 2.71 | 0.73 | 0.69 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |