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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6Vi0 | 21208 | 2023-07-10 | 2020-01-10 | 3.43 | 3.96 | 3.49 | 3.8 | 0.008 | 1.12 | 3.0 | 0.10 | 13.99 | 0.01 | 2.241 | 6.11 | 1.23 | 7.8 | 92.0 | 0.2 | -5.43 | 0.80 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20823 | 2418 | 45 | 0 | 135 | 0 | 0 | logfile |
✔ | 3J9K | 2870 | 2023-07-10 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 13.66 | 0.00 | 2.071 | 16.76 | 0.01 | 5.4 | 94.5 | 0.2 | -1.08 | 1.15 | 0.69 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✘ | 7oi7 | 12920 | 2023-07-15 | 2021-05-11 | 3.5 | 3.35 | — | 3.3 | 0.006 | 0.95 | 1.0 | 0.05 | 15.05 | 0.01 | 2.041 | 6.91 | 0.10 | 4.3 | 95.7 | 0.0 | -1.48 | 0.73 | 0.75 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89747 | 8101 | 60 | 1110 | 52 | 0 | 0 | logfile |
✘ | 7M5Y | 23685 | 2023-07-08 | 2021-03-25 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15447 | 1000 | 1 | 0 | 24 | 8 | 7534 | logfile |
✘ | 7WTo | 32793 | 2023-07-19 | 2022-02-05 | 3.5 | 3.41 | — | 3.3 | 0.005 | 0.84 | 0.0 | 0.04 | 15.98 | 0.01 | 2.105 | 6.35 | 0.05 | 7.9 | 92.0 | 0.1 | -2.03 | 0.85 | 0.84 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44490 | 2383 | 17 | 1200 | 1 | 0 | 0 | logfile |
✔ | 8HAL | 34595 | 2023-07-08 | 2022-10-26 | 4.4 | 3.43 | 4.32 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 24.87 | 0.00 | 2.187 | 12.41 | 0.00 | 1.7 | 98.3 | 0.0 | 1.26 | 0.85 | 0.73 | — | 2.9 | 0.004 | 0.68 | 0.0 | 0.04 | 26.98 | 0.00 | 2.151 | 19.38 | 0.00 | 2.9 | 97.1 | 0.0 | 0.69 | 2.71 | 0.87 | 0.80 | — | 16585 | 1292 | 11 | 302 | 0 | 0 | 0 | logfile |
✘ | 7NJ1 | 12369 | 2023-07-06 | 2021-02-14 | 2.9 | 2.23 | — | 1.9 | 0.005 | 0.70 | 1.0 | 0.05 | 13.54 | 0.00 | 2.211 | 9.26 | 1.09 | 7.4 | 92.4 | 0.2 | -2.39 | 0.75 | 0.73 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11096 | 1501 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-07-08 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 3JCN | 3285 | 2023-07-22 | 2016-01-04 | 4.6 | 4.58 | — | 4.4 | 0.007 | 1.08 | 9.0 | 0.10 | 12.71 | 0.01 | 1.344 | 3.04 | 0.18 | 6.9 | 91.6 | 1.5 | -3.44 | 0.75 | 0.65 | — | 4.4 | 0.005 | 0.77 | 0.0 | 0.04 | 15.59 | 0.01 | 1.963 | 30.05 | 0.06 | 11.2 | 88.3 | 0.5 | -2.53 | 1.05 | 0.81 | 0.79 | — | 147292 | 6123 | 57 | 4638 | 1 | 0 | 0 | logfile |
✘ | 7ZJ7 | 14743 | 2023-07-06 | 2022-04-08 | 3.95 | 4.15 | 3.84 | 4.0 | 0.013 | 1.90 | 0.0 | 0.09 | 15.37 | 0.02 | 2.329 | 1.87 | 0.55 | 4.8 | 95.2 | 0.0 | -3.03 | 0.80 | 0.81 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11958 | 1458 | 18 | 0 | 36 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2023-07-05 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.11 | 0.00 | 2.070 | 24.58 | 0.00 | 17.2 | 82.7 | 0.1 | -3.48 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z4E | 14494 | 2023-07-08 | 2022-03-03 | 4.14 | 5.32 | 4.15 | 4.2 | 0.004 | 0.55 | 0.0 | 0.04 | 15.77 | 0.00 | 2.196 | 9.63 | 1.64 | 2.0 | 98.0 | 0.0 | 0.67 | 0.88 | 0.76 | — | 4.3 | 0.004 | 0.61 | 0.0 | 0.04 | 16.22 | 0.00 | 2.159 | 18.25 | 0.00 | 3.5 | 96.5 | 0.0 | 0.86 | 3.44 | 0.90 | 0.81 | — | 14069 | 1357 | 4 | 142 | 0 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2023-07-08 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 15.73 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.08 | 0.00 | 1.930 | 17.12 | 0.00 | 9.3 | 90.7 | 0.0 | -1.32 | 1.43 | 0.59 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✘ | 8DK2 | 27481 | 2023-07-11 | 2022-07-01 | 4.1 | 4.81 | 4.17 | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 13.54 | 0.00 | 1.988 | 7.72 | 2.88 | 3.7 | 96.3 | 0.0 | 2.05 | 0.84 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23727 | 2840 | 12 | 52 | 4 | 0 | 0 | logfile |
✔ | 7JPR | 22420 | 2023-07-08 | 2020-08-09 | 4.0 | 4.90 | — | 3.3 | 0.006 | 1.20 | 0.0 | 0.06 | 15.00 | 0.01 | 2.048 | 5.49 | 0.00 | 3.6 | 96.4 | 0.0 | -2.74 | 0.82 | 0.68 | — | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.52 | 0.00 | 1.860 | 20.82 | 0.48 | 4.4 | 95.6 | 0.0 | 0.11 | 1.45 | 0.86 | 0.77 | — | 16737 | 2045 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6VN0 | 21246 | 2023-07-09 | 2020-01-29 | 4.25 | 4.57 | 4.28 | 4.5 | 0.018 | 1.76 | 0.0 | 0.10 | 10.80 | 0.01 | 2.270 | 1.83 | 0.15 | 2.9 | 96.5 | 0.6 | 0.70 | 0.74 | 0.78 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.05 | 13.05 | 0.00 | 2.086 | 11.53 | 0.10 | 6.0 | 93.6 | 0.4 | -0.52 | 1.83 | 0.73 | 0.80 | — | 19962 | 2364 | 51 | 0 | 105 | 0 | 0 | logfile |
✔ | 6oGG | 20057 | 2023-07-22 | 2019-04-02 | 4.2 | 5.09 | — | 3.4 | 0.006 | 0.85 | 0.0 | 0.07 | 13.94 | 0.01 | 2.108 | 14.59 | 0.56 | 10.6 | 89.3 | 0.1 | -4.88 | 0.87 | 0.76 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 17.77 | 0.01 | 1.791 | 35.74 | 0.06 | 12.4 | 87.5 | 0.1 | -3.21 | 1.77 | 0.88 | 0.82 | — | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✔ | 7QTJ | 14142 | 2023-07-05 | 2022-01-14 | 4.01 | 4.23 | — | 4.1 | 0.004 | 0.73 | 4.0 | 0.05 | 13.80 | 0.01 | 2.144 | 8.44 | 1.27 | 5.2 | 94.5 | 0.3 | 0.17 | 0.63 | 0.74 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 13.18 | 0.00 | 2.073 | 11.25 | 0.00 | 5.7 | 94.1 | 0.2 | -0.53 | 0.46 | 0.64 | 0.75 | — | 9942 | 1280 | 8 | 0 | 5 | 0 | 0 | logfile |
✔ | 7YGC | 33815 | 2023-07-04 | 2022-07-11 | 2.65 | 3.28 | 2.77 | 2.9 | 0.007 | 0.50 | 0.0 | 0.03 | 14.76 | 0.00 | 1.778 | 12.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.83 | — | 2.9 | 0.004 | 0.56 | 0.0 | 0.03 | 15.40 | 0.00 | 1.934 | 13.86 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.48 | 0.92 | 0.90 | — | 8690 | 0 | 3 | 407 | 6 | 0 | 0 | logfile |
✔ | 6CP7 | 7549 | 2023-07-05 | 2018-03-13 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.42 | 0.0 | 0.07 | 13.16 | 0.01 | 1.577 | 14.52 | 3.98 | 6.6 | 92.9 | 0.5 | -4.99 | 0.50 | 0.68 | — | 4.1 | 0.004 | 0.93 | 0.0 | 0.04 | 12.55 | 0.00 | 2.175 | 18.15 | 0.00 | 5.3 | 94.7 | 0.0 | -0.79 | 1.03 | 0.51 | 0.70 | — | 9164 | 1234 | 16 | 0 | 0 | 0 | 0 | logfile |