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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7LiJ | 23380 | 2023-08-18 | 2021-01-27 | 2.84 | 3.10 | — | 3.1 | 0.006 | 0.86 | 0.0 | 0.05 | 14.15 | 0.01 | 2.353 | 2.56 | 3.85 | 5.8 | 94.2 | 0.0 | -1.84 | 0.79 | 0.86 | 3.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130680 | 15900 | 60 | 0 | 60 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2023-08-26 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✘ | 8ED8 | 28032 | 2023-08-21 | 2022-09-03 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 7FD8 | 31536 | 2023-08-12 | 2021-07-16 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12152 | 1528 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8DDV | 27343 | 2023-08-21 | 2022-06-19 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 6L35 | 0821 | 2023-08-23 | 2019-10-09 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34822 | 3260 | 30 | 0 | 205 | 0 | 0 | logfile |
✘ | 6DQJ | 7978 | 2023-08-22 | 2018-06-11 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138477 | 8724 | 8 | 0 | 4 | 0 | 69265 | logfile |
✘ | 8DDS | 27340 | 2023-08-21 | 2022-06-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 6J6G | 0686 | 2023-08-19 | 2019-01-15 | 3.2 | 3.37 | — | 3.2 | 0.007 | 0.94 | 0.0 | 0.09 | 14.14 | 0.01 | 1.903 | 15.53 | 3.03 | 4.6 | 94.9 | 0.5 | -3.38 | 0.67 | 0.71 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79042 | 8981 | 47 | 550 | 14 | 0 | 0 | logfile |
✘ | 8EE6 | 28047 | 2023-08-13 | 2022-09-06 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14475 | 1808 | 5 | 0 | 37 | 0 | 0 | logfile |
✘ | 6DRA | 7991 | 2023-08-22 | 2018-06-11 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139084 | 8764 | 8 | 0 | 12 | 0 | 69544 | logfile |
✘ | 6PUY | 20484 | 2023-08-12 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.66 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 6KAC | 9955 | 2023-08-19 | 2019-06-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✘ | 7UNC | 26620 | 2023-08-09 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✘ | 6DRC | 7994 | 2023-08-22 | 2018-06-11 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138860 | 8744 | 8 | 0 | 16 | 0 | 69384 | logfile |
✘ | 6DR0 | 7987 | 2023-08-23 | 2018-06-11 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139988 | 8750 | 8 | 0 | 8 | 0 | 70013 | logfile |
✘ | 7VCF | 31890 | 2023-08-24 | 2021-09-02 | 2.5 | 2.41 | 2.38 | 2.3 | 0.007 | 1.08 | 2.0 | 0.13 | 14.50 | 0.01 | 2.057 | 3.71 | 0.19 | 5.5 | 94.3 | 0.2 | -1.21 | 0.79 | 0.81 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39626 | 4841 | 20 | 0 | 7 | 2 | 0 | logfile |
✘ | 7S4L | 24830 | 2023-08-24 | 2021-09-09 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21153 | 2556 | 21 | 0 | 36 | 3 | 0 | logfile |
✘ | 6J6N | 0691 | 2023-08-19 | 2019-01-15 | 3.86 | 3.99 | — | 3.8 | 0.008 | 1.02 | 1.0 | 0.09 | 14.52 | 0.01 | 1.820 | 15.60 | 2.51 | 5.1 | 94.2 | 0.8 | -3.41 | 0.60 | 0.63 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78937 | 8982 | 47 | 544 | 14 | 0 | 0 | logfile |
✘ | 7JN3 | 22400 | 2023-08-14 | 2020-08-03 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 14 | 68 | 8 | 0 | 0 | logfile |