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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GJ1 | 0009 | 2024-01-19 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 12.88 | 0.01 | 2.123 | 26.89 | 0.14 | 19.3 | 80.6 | 0.1 | -3.97 | 1.15 | 0.86 | 0.78 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJZ | 0012 | 2024-01-19 | 2018-05-17 | 4.06 | 4.32 | 3.49 | 4.1 | 0.011 | 1.11 | 0.0 | 0.05 | 14.16 | 0.01 | 2.008 | 13.98 | 0.00 | 10.8 | 88.9 | 0.3 | -4.09 | 0.66 | 0.79 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 14.62 | 0.00 | 1.990 | 30.71 | 0.00 | 11.6 | 88.3 | 0.1 | -0.98 | 1.51 | 0.67 | 0.80 | — | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6GKH | 0023 | 2024-01-19 | 2018-05-21 | 4.06 | 4.18 | 3.92 | 4.1 | 0.006 | 1.49 | 0.0 | 0.05 | 12.89 | 0.00 | 1.641 | 13.64 | 0.00 | 10.0 | 90.0 | 0.0 | -4.26 | 0.61 | 0.79 | — | 4.1 | 0.002 | 1.04 | 0.0 | 0.04 | 14.37 | 0.00 | 1.890 | 20.55 | 0.16 | 8.8 | 91.2 | 0.0 | -0.93 | 1.53 | 0.61 | 0.81 | — | 10587 | 685 | 4 | 30 | 4 | 0 | 4399 | logfile |
✔ | 6GKM | 0024 | 2024-01-19 | 2018-05-21 | 3.87 | 4.07 | 2.00 | 4.0 | 0.007 | 0.98 | 0.0 | 0.05 | 13.64 | 0.00 | 2.134 | 11.37 | 0.16 | 9.7 | 90.2 | 0.1 | -3.66 | 0.63 | 0.81 | 2.22 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 16.01 | 0.00 | 2.106 | 20.36 | 1.62 | 8.2 | 91.6 | 0.1 | -0.06 | 1.47 | 0.61 | 0.81 | 2.34 | 10562 | 689 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6GTC | 0061 | 2024-01-19 | 2018-06-18 | 3.91 | 3.85 | — | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 16.32 | 0.01 | 2.275 | 5.90 | 0.86 | 8.8 | 91.2 | 0.0 | -5.69 | 0.70 | 0.67 | 1.97 | 3.8 | 0.005 | 0.95 | 1.0 | 0.05 | 18.90 | 0.00 | 1.970 | 16.68 | 3.09 | 8.3 | 91.7 | 0.0 | -3.07 | 1.40 | 0.72 | 0.70 | 1.63 | 11931 | 1280 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2024-01-17 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 22.58 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.006 | 0.87 | 0.0 | 0.06 | 21.38 | 0.00 | 1.993 | 21.68 | 0.00 | 20.9 | 79.1 | 0.0 | -3.27 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6GTE | 0063 | 2024-01-19 | 2018-06-18 | 4.07 | 3.99 | — | 3.9 | 0.009 | 1.11 | 0.0 | 0.06 | 16.98 | 0.01 | 2.232 | 8.08 | 0.75 | 15.6 | 84.3 | 0.1 | -5.76 | 0.73 | 0.71 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 16.94 | 0.00 | 2.133 | 14.43 | 0.00 | 8.5 | 91.5 | 0.0 | -3.00 | 0.80 | 0.73 | 0.70 | — | 10872 | 1274 | 4 | 67 | 0 | 0 | 0 | logfile |
✔ | 6GTF | 0064 | 2024-01-19 | 2018-06-18 | 3.63 | 3.94 | — | 3.8 | 0.010 | 1.17 | 0.0 | 0.07 | 16.90 | 0.01 | 2.030 | 10.45 | 0.43 | 15.5 | 84.5 | 0.0 | -5.84 | 0.72 | 0.64 | 1.89 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 18.45 | 0.00 | 2.097 | 18.77 | 3.12 | 9.3 | 90.7 | 0.0 | -3.19 | 1.42 | 0.75 | 0.66 | 1.47 | 10871 | 1280 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6GTG | 0065 | 2024-01-19 | 2018-06-18 | 3.27 | 3.35 | — | 3.3 | 0.009 | 1.07 | 0.0 | 0.06 | 15.73 | 0.01 | 2.051 | 6.65 | 0.69 | 14.5 | 85.5 | 0.0 | -5.96 | 0.68 | 0.75 | 2.90 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 17.81 | 0.00 | 2.039 | 14.01 | 3.46 | 11.0 | 89.0 | 0.0 | -3.15 | 1.13 | 0.70 | 0.77 | 1.93 | 12538 | 1298 | 8 | 91 | 4 | 3 | 0 | logfile |
✔ | 6GX5 | 0077 | 2024-01-17 | 2018-06-26 | 3.2 | 2.51 | 2.94 | 3.2 | 0.017 | 1.20 | 0.0 | 0.11 | 16.09 | 0.01 | 2.596 | 5.96 | 4.94 | 4.3 | 95.7 | 0.0 | -3.50 | 0.85 | 0.88 | 5.60 | 3.2 | 0.004 | 0.71 | 0.0 | 0.05 | 17.59 | 0.00 | 2.370 | 5.96 | 2.88 | 5.8 | 94.2 | 0.0 | -2.79 | 0.61 | 0.83 | 0.86 | 5.18 | 2133 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYB | 0089 | 2024-01-18 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.03 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.62 | 0.0 | 0.04 | 14.18 | 0.00 | 2.154 | 7.14 | 2.87 | 5.9 | 94.1 | 0.0 | -0.97 | 0.54 | 0.81 | 0.89 | 3.72 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2024-01-17 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.27 | 0.00 | 2.073 | 14.15 | 1.77 | 3.2 | 96.8 | 0.0 | 1.17 | 1.26 | 0.37 | 0.25 | 0.10 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H61 | 0143 | 2024-01-19 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 13.13 | 0.00 | 2.107 | 14.74 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 14.21 | 0.00 | 2.045 | 21.81 | 0.00 | 8.0 | 92.0 | 0.0 | 0.85 | 1.82 | 0.63 | 0.78 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |
✔ | 6H66 | 0145 | 2024-01-19 | 2018-07-26 | 4.16 | 4.23 | 3.99 | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 12.77 | 0.01 | 2.070 | 15.41 | 0.17 | 10.4 | 89.4 | 0.2 | -3.09 | 0.61 | 0.76 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.51 | 0.00 | 2.032 | 22.85 | 0.00 | 9.1 | 90.9 | 0.0 | 0.07 | 1.86 | 0.62 | 0.78 | — | 10017 | 667 | 4 | 30 | 1 | 0 | 4120 | logfile |
✔ | 6H6B | 0148 | 2024-01-18 | 2018-07-26 | 3.4 | 3.13 | — | 3.5 | 0.008 | 1.10 | 0.0 | 0.20 | 8.13 | 0.00 | 2.530 | 5.82 | 0.00 | 14.3 | 85.7 | 0.0 | -4.80 | 0.44 | 0.74 | 5.60 | 3.3 | 0.003 | 0.84 | 0.0 | 0.18 | 11.52 | 0.00 | 2.163 | 4.33 | 3.50 | 13.0 | 87.0 | 0.0 | -3.66 | 1.82 | 0.40 | 0.77 | 3.52 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6H6E | 0149 | 2024-01-18 | 2018-07-27 | 3.95 | 3.43 | — | 3.8 | 0.021 | 1.74 | 1.0 | 0.10 | 10.97 | 0.01 | 1.834 | 1.64 | 0.01 | 1.9 | 97.9 | 0.3 | 0.48 | 0.79 | 0.80 | 1.58 | 3.7 | 0.004 | 0.73 | 0.0 | 0.04 | 16.28 | 0.00 | 2.081 | 16.39 | 3.01 | 3.2 | 96.7 | 0.1 | 0.85 | 1.89 | 0.79 | 0.82 | 1.59 | 112922 | 14231 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H6F | 0150 | 2024-01-19 | 2018-07-27 | 3.72 | 2.83 | — | 3.6 | 0.020 | 1.68 | 1.0 | 0.09 | 10.88 | 0.01 | 2.182 | 1.08 | 0.00 | 1.7 | 98.1 | 0.2 | 0.96 | 0.83 | 0.77 | 1.63 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.46 | 0.00 | 2.086 | 11.81 | 2.04 | 2.6 | 97.4 | 0.0 | 1.38 | 0.89 | 0.84 | 0.78 | 1.43 | 114303 | 14388 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HBU | 0190 | 2024-01-18 | 2018-08-13 | 3.09 | 3.04 | — | 3.1 | 0.009 | 1.18 | 0.0 | 0.06 | 11.56 | 0.01 | 1.965 | 4.88 | 0.00 | 4.9 | 94.6 | 0.5 | -5.40 | 0.75 | 0.86 | 5.08 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.45 | 0.00 | 2.161 | 7.65 | 1.91 | 5.0 | 94.8 | 0.2 | -0.08 | 0.54 | 0.77 | 0.89 | 3.70 | 9146 | 1168 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6HCo | 0196 | 2024-01-19 | 2018-08-15 | 3.58 | 4.08 | — | 3.7 | 0.009 | 1.05 | 0.0 | 0.06 | 10.57 | 0.01 | 2.082 | 7.85 | 0.45 | 7.9 | 92.1 | 0.0 | -4.59 | 0.65 | 0.75 | 1.63 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 13.01 | 0.00 | 2.136 | 13.27 | 1.41 | 6.1 | 93.9 | 0.0 | -0.31 | 1.45 | 0.67 | 0.82 | 2.10 | 12338 | 1576 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 6HCY | 0199 | 2024-01-19 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 16.87 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 15.10 | 0.00 | 2.246 | 6.23 | 3.17 | 4.5 | 95.5 | 0.0 | 0.12 | 1.91 | 0.67 | 0.90 | 3.43 | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |