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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUW | 20483 | 2024-01-19 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 20.01 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 21.45 | 0.00 | 0.000 | 8.88 | 2.15 | 3.5 | 96.5 | 0.0 | 0.46 | 0.36 | 0.69 | 0.90 | 4.22 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6PUT | 20481 | 2024-01-19 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 20.57 | 0.00 | 0.000 | 8.58 | 2.02 | 2.0 | 98.0 | 0.0 | 0.73 | 0.88 | 0.65 | 0.89 | 4.05 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 7EFC | 31083 | 2024-01-17 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 14.88 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.55 | 0.01 | 1.768 | 10.33 | 0.54 | 3.8 | 96.2 | 0.0 | 0.14 | 0.88 | 0.80 | 0.85 | 6.64 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7PQU | 13605 | 2024-01-19 | 2021-09-20 | 3.03 | 1.80 | — | 3.4 | 0.008 | 0.90 | 0.0 | 0.05 | 17.24 | 0.01 | 0.051 | 14.73 | 5.14 | 7.9 | 92.0 | 0.1 | -3.95 | 0.77 | 0.80 | 2.84 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.70 | 0.01 | 2.236 | 9.43 | 3.37 | 5.7 | 94.3 | 0.0 | -0.55 | 0.99 | 0.76 | 0.79 | 2.34 | 10798 | 1312 | 12 | 0 | 8 | 14 | 0 | logfile |
✔ | 7XDi | 33148 | 2024-01-17 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.005 | 0.86 | 2.0 | 0.05 | 17.46 | 0.01 | 2.086 | 15.71 | 6.42 | 5.4 | 94.0 | 0.6 | 0.77 | 1.34 | 0.58 | 0.82 | 1.67 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2024-01-20 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.05 | 18.47 | 0.00 | 2.069 | 15.66 | 9.47 | 10.2 | 89.3 | 0.5 | -2.20 | 0.81 | 0.49 | 0.84 | 0.92 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2024-01-18 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 17.25 | 0.00 | 1.167 | 8.51 | 0.95 | 1.4 | 98.6 | 0.0 | 1.31 | 1.90 | 0.70 | 0.89 | 3.31 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 8EEP | 28054 | 2024-01-17 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 22.11 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.033 | 1.72 | 0.0 | 0.12 | 19.42 | 0.01 | 1.841 | 9.30 | 1.61 | 0.4 | 99.6 | 0.0 | 1.86 | 1.38 | 0.74 | 0.81 | 3.63 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 8EET | 28057 | 2024-01-17 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.42 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.036 | 2.63 | 0.0 | 0.28 | 22.74 | 0.00 | 0.540 | 13.15 | 1.66 | 1.3 | 98.7 | 0.0 | 2.02 | 1.33 | 0.68 | 0.83 | 3.02 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2024-01-18 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.96 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 18.35 | 0.01 | 1.266 | 30.60 | 4.47 | 4.1 | 95.9 | 0.0 | -0.17 | 2.46 | 0.78 | 0.74 | 0.37 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2024-01-19 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 12.88 | 0.01 | 2.123 | 26.89 | 0.14 | 19.3 | 80.6 | 0.1 | -3.97 | 1.15 | 0.86 | 0.78 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K5B | 22679 | 2024-01-20 | 2020-09-16 | 4.5 | 4.62 | — | 3.9 | 0.018 | 1.93 | 50.0 | 0.10 | 12.82 | 0.01 | 0.384 | 37.45 | 2.43 | 4.6 | 94.6 | 0.8 | -0.04 | 0.66 | 0.56 | — | 4.0 | 0.007 | 0.60 | 0.0 | 0.04 | 12.51 | 0.00 | 1.795 | 63.05 | 0.01 | 4.3 | 95.4 | 0.3 | 1.54 | 2.19 | 0.74 | 0.79 | — | 119573 | 15602 | 21 | 0 | 18 | 0 | 156 | logfile |
✔ | 6SD3 | 10147 | 2024-01-19 | 2019-07-26 | 3.3 | 3.67 | — | 3.2 | 0.008 | 0.84 | 19.0 | 0.04 | 13.90 | 0.01 | 0.390 | 14.32 | 1.24 | 10.8 | 88.5 | 0.7 | -5.37 | 0.79 | 0.84 | 2.93 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.24 | 0.00 | 2.154 | 10.68 | 2.41 | 2.9 | 97.1 | 0.0 | -0.26 | 0.68 | 0.79 | 0.85 | 2.34 | 63144 | 8212 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL1 | 16709 | 2024-01-20 | 2023-02-16 | 3.35 | 3.67 | 2.87 | 3.6 | 0.008 | 0.93 | 0.0 | 0.06 | 12.18 | 0.01 | 0.393 | 14.11 | 0.54 | 0.0 | 99.1 | 0.9 | -1.05 | 0.61 | 0.75 | 3.54 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.24 | 0.00 | 2.182 | 11.26 | 0.72 | 2.1 | 97.4 | 0.5 | 1.93 | 0.64 | 0.65 | 0.78 | 3.06 | 10494 | 1362 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KZo | 23084 | 2024-01-17 | 2020-12-10 | 3.3 | 2.88 | — | 3.3 | 0.005 | 0.86 | 1.0 | 0.05 | 15.08 | 0.01 | 0.399 | 14.01 | 0.29 | 4.0 | 96.0 | 0.0 | -1.81 | 0.77 | 0.76 | 2.07 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 17.06 | 0.00 | 1.858 | 11.47 | 2.95 | 3.5 | 96.5 | 0.0 | 0.34 | 1.49 | 0.78 | 0.79 | 1.61 | 54110 | 6873 | 34 | 8 | 14 | 0 | 0 | logfile |
✔ | 6FVW | 4322 | 2024-01-18 | 2018-03-05 | 4.5 | 4.60 | — | 4.6 | 0.035 | 3.52 | 888.0 | 0.20 | 17.66 | 0.03 | 0.436 | 3.52 | 2.98 | 5.7 | 92.3 | 2.0 | -2.29 | 0.50 | 0.54 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.00 | 0.00 | 1.910 | 18.23 | 0.07 | 4.6 | 95.2 | 0.2 | -0.55 | 2.32 | 0.55 | 0.77 | — | 110594 | 14032 | 59 | 0 | 12 | 20 | 0 | logfile |
✔ | 6i1X | 0326 | 2024-01-17 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 16.50 | 0.00 | 2.113 | 17.73 | 2.99 | 3.9 | 95.9 | 0.3 | -1.11 | 1.03 | 0.65 | 0.61 | 0.90 | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSZ | 25417 | 2024-01-20 | 2021-11-11 | 3.25 | 3.49 | — | 3.5 | 0.014 | 1.70 | 20.0 | 0.12 | 14.90 | 0.01 | 0.467 | 7.21 | 6.31 | 5.5 | 94.5 | 0.0 | -2.29 | 0.56 | 0.79 | 3.16 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 15.55 | 0.00 | 2.230 | 5.73 | 2.12 | 4.1 | 95.9 | 0.0 | 0.92 | 0.57 | 0.70 | 0.83 | 3.69 | 15283 | 1908 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2024-01-19 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.30 | 0.00 | 2.069 | 13.36 | 5.80 | 7.8 | 91.5 | 0.6 | -0.34 | 1.75 | 0.59 | 0.73 | 1.09 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HQo | 34952 | 2024-01-19 | 2022-12-13 | 3.2 | 3.45 | 3.81 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 13.20 | 0.01 | 0.497 | 6.45 | 0.00 | 2.6 | 97.4 | 0.0 | -1.42 | 0.54 | 0.57 | 0.18 | 3.4 | 0.007 | 0.76 | 0.0 | 0.04 | 16.42 | 0.00 | 1.846 | 41.86 | 4.11 | 6.3 | 93.6 | 0.0 | -0.30 | 1.76 | 0.64 | 0.81 | 1.51 | 62613 | 7656 | 33 | 0 | 0 | 0 | 1902 | logfile |