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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XHi | 22186 | 2023-10-04 | 2020-06-18 | 4.19 | 4.70 | — | 4.5 | 0.013 | 1.51 | 0.0 | 0.08 | 14.97 | 0.01 | 2.283 | 2.42 | 0.00 | 2.6 | 97.4 | 0.0 | -1.57 | 0.85 | 0.81 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.37 | 0.00 | 2.126 | 8.13 | 0.00 | 2.9 | 97.1 | 0.0 | 1.39 | 1.65 | 0.84 | 0.81 | — | 58554 | 8514 | 18 | 0 | 18 | 0 | 0 | logfile |
✔ | 7YHK | 33831 | 2023-10-07 | 2022-07-13 | 3.14 | 3.38 | 3.17 | 3.4 | 0.007 | 0.99 | 0.0 | 0.06 | 14.49 | 0.01 | 2.283 | 5.30 | 0.76 | 5.0 | 94.8 | 0.2 | -3.95 | 0.54 | 0.74 | 4.42 | 3.4 | 0.005 | 0.67 | 0.0 | 0.04 | 16.01 | 0.00 | 2.230 | 8.32 | 0.13 | 4.9 | 95.1 | 0.0 | -1.37 | 0.46 | 0.71 | 0.88 | 4.05 | 14502 | 1812 | 15 | 0 | 18 | 0 | 0 | logfile |
✔ | 7SS9 | 25405 | 2023-10-25 | 2021-11-10 | 3.9 | 4.09 | 4.66 | 4.0 | 0.010 | 1.07 | 0.0 | 0.09 | 16.35 | 0.01 | 2.130 | 12.90 | 1.63 | 11.7 | 87.8 | 0.5 | -4.79 | 0.76 | 0.73 | 0.63 | 4.0 | 0.006 | 0.90 | 0.0 | 0.04 | 18.44 | 0.01 | 1.953 | 32.54 | 1.75 | 14.4 | 85.4 | 0.3 | -3.33 | 0.69 | 0.77 | 0.73 | 0.62 | 149808 | 6171 | 57 | 4736 | 0 | 0 | 0 | logfile |
✔ | 7oZo | 13130 | 2023-10-03 | 2021-06-28 | 3.8 | 4.06 | 3.82 | 3.9 | 0.002 | 0.39 | 0.0 | 0.04 | 14.07 | 0.00 | 1.993 | 4.62 | 0.00 | 2.1 | 97.9 | 0.0 | 1.21 | 0.79 | 0.71 | 0.70 | 3.9 | 0.004 | 0.73 | 0.0 | 0.05 | 16.69 | 0.00 | 2.132 | 16.59 | 0.40 | 3.6 | 96.4 | 0.0 | -0.29 | 1.27 | 0.82 | 0.78 | 0.99 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 6VSB | 21375 | 2023-10-11 | 2020-02-10 | 3.46 | 4.01 | 3.55 | 3.8 | 0.005 | 0.92 | 0.0 | 0.07 | 12.47 | 0.02 | 2.054 | 13.62 | 0.59 | 5.2 | 94.6 | 0.2 | -1.66 | 0.82 | 0.81 | 2.11 | 3.8 | 0.005 | 0.69 | 0.0 | 0.05 | 14.46 | 0.00 | 2.166 | 10.05 | 0.38 | 4.8 | 95.2 | 0.0 | -0.48 | 0.61 | 0.83 | 0.85 | 2.35 | 22854 | 2905 | 23 | 0 | 61 | 0 | 0 | logfile |
✔ | 7V4i | 31712 | 2023-10-13 | 2021-08-13 | 3.3 | 3.91 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 14.20 | 0.01 | 2.079 | 10.39 | 0.00 | 5.5 | 94.5 | 0.0 | -1.15 | 0.70 | 0.74 | 1.97 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.97 | 0.01 | 2.102 | 11.37 | 0.17 | 4.9 | 95.1 | 0.0 | -0.92 | 0.37 | 0.71 | 0.75 | 1.59 | 27680 | 3560 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JCW | 9799 | 2023-10-15 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.33 | 0.00 | 2.162 | 4.95 | 0.03 | 3.5 | 96.5 | 0.0 | -0.07 | 1.31 | 0.86 | 0.89 | 3.75 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 7L7K | 23215 | 2023-10-10 | 2020-12-28 | 3.29 | 3.24 | — | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 15.73 | 0.00 | 2.170 | 9.39 | 7.06 | 5.4 | 94.6 | 0.0 | -3.85 | 0.69 | 0.78 | 2.07 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 16.22 | 0.00 | 2.127 | 8.79 | 0.25 | 5.7 | 94.3 | 0.0 | -1.01 | 0.48 | 0.71 | 0.82 | 1.95 | 22124 | 2919 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TB8 | 25794 | 2023-10-16 | 2021-12-21 | 2.83 | 3.55 | 2.90 | 3.1 | 0.004 | 0.64 | 0.0 | 0.05 | 13.32 | 0.00 | 2.099 | 7.47 | 0.03 | 6.9 | 92.8 | 0.3 | -1.54 | 0.82 | 0.80 | 2.75 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.81 | 0.00 | 2.135 | 7.32 | 1.11 | 6.4 | 93.4 | 0.2 | -0.98 | 0.41 | 0.84 | 0.88 | 2.21 | 33230 | 4189 | 23 | 0 | 43 | 0 | 0 | logfile |
✔ | 7K8X | 22734 | 2023-10-15 | 2020-09-27 | 3.9 | 4.42 | — | 4.1 | 0.003 | 0.62 | 0.0 | 0.06 | 13.15 | 0.00 | 1.857 | 13.43 | 2.49 | 3.3 | 96.4 | 0.3 | -2.04 | 0.76 | 0.69 | 1.31 | 4.1 | 0.003 | 0.65 | 0.0 | 0.05 | 14.38 | 0.00 | 2.104 | 12.39 | 0.13 | 4.4 | 95.5 | 0.1 | 0.08 | 1.18 | 0.80 | 0.83 | 1.74 | 27399 | 3478 | 10 | 0 | 28 | 0 | 0 | logfile |
✔ | 7R8M | 24318 | 2023-10-13 | 2021-06-26 | 3.4 | 3.69 | — | 3.6 | 0.004 | 0.75 | 0.0 | 0.05 | 13.90 | 0.02 | 1.934 | 15.85 | 0.54 | 7.8 | 92.2 | 0.1 | -1.74 | 0.69 | 0.71 | 1.51 | 3.6 | 0.003 | 0.66 | 0.0 | 0.05 | 15.58 | 0.00 | 2.147 | 16.22 | 0.39 | 7.6 | 92.4 | 0.0 | -1.68 | 0.48 | 0.69 | 0.75 | 1.33 | 26323 | 3411 | 15 | 0 | 33 | 0 | 0 | logfile |
✔ | 8EUY | 24420 | 2023-10-13 | 2022-10-19 | 3.0 | 3.03 | — | 3.0 | 0.003 | 0.51 | 0.0 | 0.04 | 17.44 | 0.00 | 2.180 | 10.11 | 2.88 | 3.6 | 96.2 | 0.1 | 0.10 | 0.77 | 0.77 | 2.72 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 17.41 | 0.00 | 2.057 | 11.16 | 3.47 | 3.7 | 96.3 | 0.1 | 0.60 | 1.53 | 0.78 | 0.78 | 2.76 | 80249 | 6123 | 41 | 1619 | 1 | 0 | 0 | logfile |
✔ | 7YVS | 34137 | 2023-10-15 | 2022-08-19 | 2.8 | 3.06 | 2.90 | 3.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.86 | 0.00 | 2.173 | 6.15 | 0.98 | 4.9 | 95.1 | 0.0 | -0.49 | 0.77 | 0.88 | 3.61 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 15.34 | 0.00 | 2.172 | 6.37 | 1.48 | 5.0 | 95.0 | 0.0 | 0.00 | 0.31 | 0.76 | 0.89 | 3.47 | 30593 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✔ | 7KNB | 22941 | 2023-10-14 | 2020-11-04 | 3.93 | 4.91 | 4.02 | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.71 | 0.00 | 2.207 | 4.35 | 0.00 | 3.6 | 96.4 | 0.0 | -0.61 | 0.87 | 0.76 | 0.69 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 15.03 | 0.00 | 2.106 | 13.37 | 0.06 | 4.4 | 95.6 | 0.0 | -0.41 | 1.19 | 0.90 | 0.84 | 0.93 | 29224 | 3637 | 13 | 0 | 56 | 0 | 0 | logfile |
✔ | 7T64 | 25709 | 2023-10-12 | 2021-12-13 | 4.0 | 4.36 | 4.08 | 3.9 | 0.002 | 0.64 | 0.0 | 0.04 | 14.83 | 0.00 | 2.175 | 5.90 | 0.00 | 6.1 | 93.5 | 0.4 | -0.38 | 0.76 | 0.70 | — | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 16.19 | 0.00 | 2.067 | 11.75 | 0.25 | 9.1 | 90.7 | 0.2 | -0.27 | 0.50 | 0.77 | 0.74 | — | 134196 | 17416 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZXN | 11526 | 2023-10-03 | 2020-07-30 | 2.93 | 3.41 | — | 3.3 | 0.004 | 0.56 | 0.0 | 0.05 | 12.73 | 0.00 | 1.940 | 7.08 | 0.10 | 4.5 | 95.5 | 0.0 | -0.46 | 0.54 | 0.73 | 2.84 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 14.62 | 0.00 | 1.903 | 8.60 | 0.78 | 4.8 | 95.2 | 0.0 | -0.32 | 1.11 | 0.51 | 0.72 | 2.85 | 55098 | 3522 | 21 | 0 | 63 | 0 | 26763 | logfile |
✔ | 6o8Y | 0658 | 2023-10-13 | 2019-03-12 | 4.14 | 4.86 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.05 | 16.40 | 0.01 | 2.135 | 9.41 | 0.39 | 14.8 | 85.0 | 0.2 | -4.58 | 0.89 | 0.82 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 16.46 | 0.00 | 1.975 | 21.84 | 0.07 | 12.6 | 87.3 | 0.1 | -2.75 | 1.66 | 0.90 | 0.83 | — | 138210 | 5209 | 53 | 4541 | 4 | 0 | 0 | logfile |
✔ | 7Z0o | 14428 | 2023-10-06 | 2022-02-23 | 2.8 | 1.99 | 2.70 | 1.8 | 0.004 | 0.66 | 0.0 | 0.04 | 19.63 | 0.00 | 2.189 | 6.20 | 1.42 | 1.7 | 98.3 | 0.0 | 1.08 | 0.68 | 0.73 | 3.27 | 1.7 | 0.004 | 0.59 | 0.0 | 0.04 | 21.28 | 0.00 | 2.134 | 9.34 | 3.46 | 2.5 | 97.5 | 0.0 | 1.84 | 0.50 | 0.77 | 0.79 | 3.27 | 11864 | 1256 | 10 | 78 | 0 | 0 | 0 | logfile |
✔ | 8D8o | 27253 | 2023-10-06 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 16.20 | 0.00 | 2.200 | 7.23 | 0.23 | 5.2 | 94.8 | 0.0 | -0.60 | 0.27 | 0.73 | 0.82 | 2.29 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7LUV | 23527 | 2023-10-09 | 2021-02-23 | 3.7 | 4.02 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.05 | 9.84 | 0.00 | 2.050 | 10.92 | 0.05 | 9.6 | 90.1 | 0.3 | -4.47 | 0.76 | 0.79 | 2.90 | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 13.35 | 0.00 | 2.152 | 6.95 | 0.45 | 5.2 | 94.8 | 0.0 | 0.42 | 0.90 | 0.77 | 0.82 | 1.91 | 18773 | 2168 | 6 | 0 | 210 | 0 | 0 | logfile |