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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SHT | 10205 | 2023-10-18 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 19.52 | 0.00 | 0.000 | 5.30 | 1.95 | 1.7 | 97.9 | 0.4 | 5.47 | 1.48 | 0.71 | 0.84 | 1.97 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6PUT | 20481 | 2023-10-05 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 20.66 | 0.00 | 0.000 | 8.82 | 1.11 | 2.0 | 98.0 | 0.0 | 0.82 | 0.88 | 0.65 | 0.89 | 4.06 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6PUW | 20483 | 2023-10-05 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.85 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.59 | 0.00 | 0.000 | 8.78 | 1.64 | 3.1 | 96.9 | 0.0 | 0.60 | 0.39 | 0.69 | 0.90 | 4.05 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6PUZ | 20485 | 2023-10-05 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.70 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.006 | 0.58 | 0.0 | 0.04 | 21.59 | 0.00 | 0.000 | 7.88 | 0.77 | 2.3 | 97.7 | 0.0 | 0.45 | 0.39 | 0.70 | 0.90 | 4.02 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 7EFC | 31083 | 2023-10-02 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 15.03 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.60 | 0.00 | 1.907 | 5.77 | 0.54 | 2.5 | 97.5 | 0.0 | 0.68 | 0.91 | 0.80 | 0.85 | 5.94 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7EFD | 31084 | 2023-10-02 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.47 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | 1.9 | 0.004 | 0.74 | 0.0 | 0.05 | 14.91 | 0.00 | 1.834 | 7.38 | 0.00 | 3.4 | 96.0 | 0.6 | 0.90 | 0.55 | 0.80 | 0.84 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2023-10-11 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.013 | 0.92 | 0.0 | 0.15 | 13.62 | 0.01 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.81 | 0.0 | 0.11 | 15.16 | 0.00 | 0.778 | 9.09 | 0.16 | 3.4 | 96.6 | 0.0 | 0.29 | 0.66 | 0.82 | 0.84 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 7B0N | 11969 | 2023-10-11 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 14.97 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.005 | 0.86 | 0.0 | 0.13 | 16.23 | 0.00 | 1.907 | 9.08 | 0.17 | 5.4 | 94.6 | 0.0 | -0.26 | 2.50 | 0.60 | 0.75 | 2.36 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 5A1A | 2984 | 2023-10-16 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.15 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.003 | 0.66 | 0.0 | 0.04 | 17.63 | 0.00 | 1.961 | 10.92 | 2.75 | 2.3 | 97.6 | 0.1 | -0.56 | 1.09 | 0.53 | 0.79 | 3.86 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5ooL | 3842 | 2023-10-18 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 14.18 | 0.01 | 0.037 | 6.31 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | 4.9 | 0.005 | 0.90 | 0.0 | 0.05 | 17.45 | 0.01 | 1.071 | 27.85 | 1.14 | 6.3 | 93.7 | 0.0 | -1.16 | 1.56 | 0.78 | 0.71 | 0.81 | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✔ | 7PQU | 13605 | 2023-10-05 | 2021-09-20 | 3.03 | 1.80 | — | 3.4 | 0.008 | 0.88 | 0.0 | 0.05 | 16.74 | 0.01 | 0.051 | 14.73 | 5.14 | 7.9 | 92.0 | 0.1 | -3.95 | 0.77 | 0.80 | 2.84 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.43 | 0.01 | 2.258 | 9.01 | 0.18 | 6.0 | 94.0 | 0.0 | -0.28 | 0.99 | 0.75 | 0.79 | 2.45 | 10798 | 1312 | 12 | 0 | 8 | 14 | 0 | logfile |
✔ | 7o1C | 12695 | 2023-10-23 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 14.38 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | 2.3 | 0.004 | 0.65 | 0.0 | 0.04 | 14.55 | 0.01 | 0.899 | 8.01 | 2.55 | 4.3 | 95.7 | 0.1 | -0.22 | 1.01 | 0.81 | 0.85 | 2.92 | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✔ | 7Q4K | 13805 | 2023-10-20 | 2021-10-31 | 3.0 | 3.23 | — | 3.1 | 0.015 | 1.62 | 2.0 | 0.08 | 14.77 | 0.02 | 0.056 | 3.83 | 0.63 | 4.5 | 95.4 | 0.1 | -3.83 | 0.77 | 0.82 | 2.32 | 3.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.11 | 0.01 | 1.778 | 8.21 | 2.78 | 4.0 | 95.9 | 0.1 | -0.78 | 0.59 | 0.81 | 0.89 | 2.49 | 146607 | 5682 | 73 | 4711 | 173 | 800 | 0 | logfile |
✔ | 7EPP | 31248 | 2023-10-13 | 2021-04-27 | 2.4 | 2.51 | — | 2.6 | 0.004 | 0.67 | 0.0 | 0.04 | 16.13 | 0.01 | 0.073 | 3.24 | 3.57 | 7.3 | 92.7 | 0.0 | -2.99 | 0.64 | 0.81 | 3.73 | 2.6 | 0.004 | 0.73 | 0.0 | 0.05 | 16.70 | 0.01 | 2.013 | 5.31 | 1.12 | 7.3 | 92.7 | 0.0 | -1.67 | 0.53 | 0.69 | 0.85 | 3.46 | 80520 | 10020 | 60 | 0 | 0 | 1800 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-10-10 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 13.71 | 0.01 | 1.950 | 32.75 | 0.09 | 15.2 | 83.8 | 1.0 | -3.85 | 4.19 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2023-10-02 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 2.125 | 14.62 | 0.92 | 5.3 | 94.0 | 0.6 | 0.66 | 1.35 | 0.58 | 0.82 | 1.62 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AQD | 11864 | 2023-10-17 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 16.55 | 0.01 | 0.152 | 6.41 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | 3.2 | 0.008 | 0.72 | 0.0 | 0.04 | 17.24 | 0.01 | 1.873 | 15.28 | 0.61 | 7.2 | 92.7 | 0.1 | -1.22 | 2.50 | 0.90 | 0.90 | 1.83 | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |
✔ | 6o9J | 0661 | 2023-10-17 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 1.25 | 25.0 | 0.10 | 17.39 | 0.01 | 0.154 | 55.29 | 23.17 | 26.6 | 58.7 | 14.7 | -7.10 | 0.74 | 0.66 | 0.16 | 3.9 | 0.011 | 1.10 | 10.0 | 0.05 | 17.46 | 0.01 | 1.283 | 32.81 | 2.16 | 23.3 | 73.8 | 2.9 | -4.93 | 1.32 | 0.79 | 0.77 | 0.46 | 142682 | 5731 | 53 | 4564 | 0 | 0 | 0 | logfile |
✔ | 6XZB | 10657 | 2023-10-19 | 2020-02-03 | 2.54 | 3.99 | — | 3.8 | 0.008 | 0.65 | 1.0 | 0.04 | 14.47 | 0.02 | 0.178 | 7.02 | 2.93 | 3.1 | 96.4 | 0.4 | -1.96 | 0.75 | 0.71 | 2.59 | 3.8 | 0.004 | 0.72 | 0.0 | 0.03 | 15.31 | 0.01 | 1.151 | 13.14 | 4.24 | 3.7 | 96.1 | 0.1 | -0.12 | 1.06 | 0.73 | 0.86 | 1.93 | 145650 | 5732 | 55 | 4692 | 1 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-10-12 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 1.504 | 15.88 | 0.44 | 11.4 | 88.3 | 0.3 | -1.95 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |