The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SHS | 10204 | 2023-10-03 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.002 | 0.64 | 0.0 | 0.05 | 12.90 | 0.00 | 2.248 | 6.00 | 0.00 | 16.4 | 83.6 | 0.0 | -5.26 | 1.68 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7BoX | 30135 | 2023-10-09 | 2020-03-20 | 3.8 | 3.29 | — | 3.8 | 0.012 | 1.46 | 5.0 | 0.07 | 12.93 | 0.01 | 2.236 | 9.53 | 0.05 | 8.1 | 91.5 | 0.5 | -4.94 | 0.78 | 0.81 | 2.90 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 17.01 | 0.00 | 2.158 | 11.25 | 0.60 | 7.4 | 92.6 | 0.0 | -0.63 | 1.06 | 0.80 | 0.84 | 2.34 | 18618 | 2334 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-10-02 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NJ5 | 12373 | 2023-10-14 | 2021-02-16 | 4.63 | 4.97 | — | 4.6 | 0.004 | 0.73 | 1.0 | 0.05 | 13.59 | 0.01 | 1.907 | 8.73 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.75 | 0.49 | — | 4.6 | 0.003 | 0.66 | 0.0 | 0.04 | 13.94 | 0.00 | 1.974 | 19.39 | 0.00 | 4.9 | 95.1 | 0.0 | -0.96 | 2.36 | 0.83 | 0.68 | — | 28806 | 1800 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6oWT | 20217 | 2023-10-05 | 2019-05-10 | 3.8 | 4.08 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 12.40 | 0.01 | 2.304 | 4.41 | 2.31 | 4.4 | 95.6 | 0.0 | -3.98 | 0.77 | 0.76 | 1.52 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 15.26 | 0.00 | 2.103 | 13.27 | 0.27 | 5.2 | 94.8 | 0.0 | 0.31 | 0.68 | 0.78 | 0.77 | 0.91 | 11649 | 1575 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XY1 | 33507 | 2023-10-05 | 2022-05-31 | 3.3 | 3.36 | — | 3.3 | 0.005 | 0.76 | 6.0 | 0.06 | 13.22 | 0.01 | 2.035 | 16.43 | 0.97 | 8.4 | 91.0 | 0.6 | -2.22 | 0.76 | 0.83 | 3.69 | 3.3 | 0.003 | 0.63 | 0.0 | 0.05 | 14.80 | 0.00 | 2.074 | 10.97 | 0.49 | 9.9 | 89.9 | 0.2 | -2.36 | 0.32 | 0.77 | 0.85 | 3.23 | 11550 | 1536 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2023-10-14 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 13.49 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.03 | 0.00 | 1.892 | 18.40 | 0.00 | 4.7 | 95.3 | 0.0 | -0.65 | 2.33 | 0.79 | 0.63 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6F36 | 4176 | 2023-10-03 | 2017-11-28 | 3.7 | 2.63 | — | 3.9 | 0.010 | 1.13 | 0.0 | 0.07 | 11.06 | 0.01 | 2.304 | 7.63 | 0.27 | 5.1 | 94.9 | 0.0 | -5.92 | 0.82 | 0.70 | 1.42 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 14.86 | 0.00 | 2.160 | 13.70 | 0.66 | 3.7 | 96.3 | 0.0 | -0.06 | 0.89 | 0.84 | 0.73 | 1.03 | 7453 | 1039 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUT | 20205 | 2023-10-05 | 2019-05-05 | 2.6 | 2.84 | — | 2.9 | 0.007 | 0.93 | 0.0 | 0.06 | 12.60 | 0.01 | 2.099 | 6.06 | 0.00 | 4.8 | 95.2 | 0.0 | -2.10 | 0.75 | 0.86 | 4.03 | 2.9 | 0.003 | 0.58 | 0.0 | 0.05 | 15.10 | 0.01 | 2.141 | 6.11 | 1.82 | 2.8 | 97.2 | 0.0 | 0.10 | 0.43 | 0.76 | 0.87 | 3.46 | 11505 | 1494 | 6 | 0 | 0 | 226 | 0 | logfile |
✔ | 7NK2 | 12429 | 2023-10-14 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 13.61 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.003 | 0.66 | 0.0 | 0.04 | 13.83 | 0.00 | 1.914 | 17.59 | 0.00 | 5.7 | 94.3 | 0.0 | -0.91 | 4.61 | 0.73 | 0.68 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7LYS | 23600 | 2023-10-07 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.65 | 0.00 | 1.976 | 5.82 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 18.33 | 0.00 | 1.996 | 6.19 | 0.00 | 3.6 | 96.4 | 0.0 | 1.12 | 0.35 | 0.83 | 0.84 | 2.01 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |
✔ | 7JV2 | 22491 | 2023-10-02 | 2020-08-20 | 3.5 | 3.49 | 3.41 | 3.7 | 0.015 | 1.39 | 0.0 | 0.08 | 11.43 | 0.01 | 2.587 | 0.00 | 1.32 | 3.6 | 96.4 | 0.0 | 0.82 | 0.69 | 0.74 | 3.48 | 3.7 | 0.004 | 0.72 | 0.0 | 0.04 | 14.90 | 0.00 | 2.223 | 14.03 | 0.44 | 5.5 | 94.5 | 0.0 | -0.83 | 1.27 | 0.71 | 0.77 | 3.76 | 2151 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CXR | 30495 | 2023-10-03 | 2020-09-02 | 3.4 | 3.32 | 3.43 | 3.7 | 0.007 | 0.87 | 1.0 | 0.06 | 16.56 | 0.00 | 2.199 | 12.99 | 3.39 | 6.6 | 93.1 | 0.3 | -2.27 | 0.52 | 0.54 | 1.33 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 18.18 | 0.00 | 2.283 | 11.73 | 0.00 | 4.1 | 95.9 | 0.0 | 1.92 | 1.57 | 0.59 | 0.62 | 1.16 | 5168 | 614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-10-02 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZB | 20533 | 2023-10-03 | 2019-07-31 | 4.55 | 4.69 | — | 4.5 | 0.009 | 1.24 | 0.0 | 0.06 | 8.37 | 0.01 | 2.231 | 3.11 | 0.00 | 5.9 | 94.1 | 0.0 | -3.87 | 0.62 | 0.76 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.04 | 8.72 | 0.00 | 1.992 | 8.78 | 0.00 | 6.4 | 93.6 | 0.0 | 0.88 | 0.59 | 0.64 | 0.78 | — | 7747 | 1357 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WLC | 32581 | 2023-10-02 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 16.00 | 0.00 | 2.188 | 18.56 | 0.56 | 8.3 | 91.7 | 0.0 | -1.72 | 0.54 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2023-10-02 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.78 | 0.0 | 0.04 | 17.71 | 0.00 | 2.103 | 10.58 | 0.46 | 7.9 | 91.5 | 0.6 | 0.80 | 1.24 | 0.72 | 0.85 | 3.33 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NJ7 | 12375 | 2023-10-14 | 2021-02-16 | 4.82 | 5.23 | — | 4.8 | 0.004 | 0.73 | 1.0 | 0.04 | 13.69 | 0.01 | 1.907 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -0.72 | 0.74 | 0.46 | — | 4.9 | 0.003 | 0.63 | 0.0 | 0.04 | 13.62 | 0.00 | 1.843 | 18.66 | 0.00 | 5.1 | 94.9 | 0.0 | -0.81 | 2.32 | 0.82 | 0.64 | — | 28818 | 1797 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7WD8 | 32434 | 2023-10-02 | 2021-12-21 | 4.3 | 3.48 | — | 3.5 | 0.002 | 0.51 | 0.0 | 0.04 | 6.43 | 0.00 | 2.246 | 8.80 | 0.00 | 4.1 | 95.7 | 0.2 | -0.96 | 0.60 | 0.61 | — | 3.4 | 0.005 | 0.84 | 0.0 | 0.05 | 12.81 | 0.01 | 2.128 | 19.11 | 0.00 | 7.2 | 92.6 | 0.2 | -0.68 | 1.67 | 0.64 | 0.68 | — | 4029 | 524 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D69 | 30591 | 2023-10-05 | 2020-09-29 | 3.57 | 3.34 | — | 3.6 | 0.009 | 0.88 | 0.0 | 0.05 | 28.97 | 0.01 | 2.062 | 19.76 | 0.00 | 5.2 | 94.8 | 0.0 | -1.18 | 0.78 | 0.80 | 2.26 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 28.68 | 0.00 | 2.122 | 15.18 | 0.49 | 2.7 | 97.3 | 0.0 | 1.70 | 1.15 | 0.77 | 0.79 | 1.51 | 10857 | 727 | 10 | 250 | 0 | 0 | 0 | logfile |