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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DMo | 7964 | 2023-10-04 | 2018-06-05 | 4.1 | 4.16 | — | 4.1 | 0.008 | 1.27 | 0.0 | 0.06 | 13.73 | 0.01 | 1.764 | 8.90 | 2.78 | 11.1 | 88.6 | 0.3 | -4.11 | 0.55 | 0.64 | — | 4.1 | 0.003 | 0.83 | 0.0 | 0.05 | 13.68 | 0.00 | 2.175 | 14.88 | 0.00 | 9.1 | 90.9 | 0.0 | -0.52 | 2.16 | 0.58 | 0.71 | — | 7853 | 982 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 8iW7 | 35763 | 2023-10-04 | 2023-03-29 | 2.97 | 3.20 | 2.95 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 15.12 | 0.00 | 2.214 | 9.35 | 1.85 | 3.8 | 96.2 | 0.0 | -1.84 | 0.67 | 0.78 | 2.02 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.58 | 0.00 | 2.193 | 7.73 | 3.71 | 3.5 | 96.5 | 0.0 | -0.74 | 0.39 | 0.67 | 0.77 | 1.87 | 8305 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8F7Q | 28907 | 2023-10-06 | 2022-11-20 | 3.22 | 3.34 | 3.24 | 3.4 | 0.004 | 0.87 | 0.0 | 0.07 | 8.03 | 0.01 | 2.262 | 3.31 | 0.00 | 1.4 | 98.6 | 0.0 | 0.89 | 0.64 | 0.78 | 2.57 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 12.74 | 0.00 | 2.135 | 5.66 | 0.23 | 1.8 | 98.2 | 0.0 | 2.02 | 0.66 | 0.64 | 0.83 | 2.76 | 11994 | 1484 | 11 | 0 | 10 | 0 | 0 | logfile |
✔ | 7oHB | 12899 | 2023-10-06 | 2021-05-10 | 3.4 | 3.61 | — | 3.4 | 0.005 | 0.86 | 0.0 | 0.05 | 28.70 | 0.01 | 2.254 | 4.48 | 0.89 | 2.6 | 97.4 | 0.0 | -2.05 | 0.89 | 0.86 | 3.09 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 27.91 | 0.00 | 2.213 | 11.01 | 0.13 | 2.6 | 97.4 | 0.0 | 1.62 | 1.19 | 0.90 | 0.88 | 2.44 | 13424 | 943 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7AZP | 11950 | 2023-10-13 | 2020-11-17 | 3.5 | 3.84 | 3.46 | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 13.41 | 0.00 | 2.210 | 10.65 | 0.71 | 3.3 | 96.7 | 0.0 | -2.29 | 0.89 | 0.86 | 0.66 | 3.6 | 0.007 | 0.75 | 0.0 | 0.05 | 14.85 | 0.00 | 2.172 | 14.54 | 0.54 | 4.3 | 95.7 | 0.0 | 0.48 | 1.22 | 0.89 | 0.86 | 1.01 | 27391 | 3675 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UGE | 20762 | 2023-10-07 | 2019-09-26 | 3.6 | 4.02 | — | 3.9 | 0.008 | 1.07 | 0.0 | 0.05 | 14.24 | 0.01 | 2.060 | 3.35 | 0.23 | 6.4 | 93.6 | 0.1 | -4.80 | 0.71 | 0.69 | 1.89 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 15.72 | 0.00 | 1.974 | 5.45 | 0.15 | 4.1 | 95.9 | 0.0 | -0.72 | 0.45 | 0.77 | 0.82 | 1.38 | 13876 | 1862 | 12 | 0 | 9 | 0 | 0 | logfile |
✔ | 6V4J | 21041 | 2023-10-13 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.81 | 0.0 | 0.04 | 16.33 | 0.00 | 2.100 | 13.99 | 3.48 | 4.6 | 95.4 | 0.0 | -1.07 | 1.53 | 0.48 | 0.50 | 1.34 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZLo | 11270 | 2023-10-20 | 2020-06-30 | 2.9 | 2.99 | 2.87 | 2.9 | 0.004 | 0.74 | 0.0 | 0.05 | 12.55 | 0.01 | 2.346 | 2.95 | 0.52 | 2.6 | 97.4 | 0.0 | -2.13 | 0.80 | 0.83 | 3.16 | 3.0 | 0.004 | 0.54 | 0.0 | 0.05 | 15.61 | 0.00 | 2.278 | 4.45 | 1.88 | 2.0 | 98.0 | 0.0 | 1.30 | 0.54 | 0.83 | 0.88 | 3.54 | 105060 | 13920 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VTQ | 32120 | 2023-10-12 | 2021-10-30 | 3.55 | 4.59 | — | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 15.12 | 0.00 | 2.136 | 14.14 | 0.05 | 5.6 | 94.4 | 0.0 | -0.05 | 0.74 | 0.61 | 0.73 | 3.3 | 0.002 | 0.70 | 0.0 | 0.04 | 15.85 | 0.00 | 2.112 | 13.74 | 0.12 | 3.3 | 96.7 | 0.0 | 0.45 | 0.53 | 0.87 | 0.80 | 0.58 | 76572 | 9468 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 8iW9 | 35764 | 2023-10-04 | 2023-03-29 | 3.08 | 3.58 | 2.85 | 3.3 | 0.003 | 0.66 | 1.0 | 0.05 | 14.65 | 0.00 | 2.168 | 8.27 | 0.61 | 4.4 | 95.6 | 0.0 | 0.21 | 0.78 | 0.88 | 3.16 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.07 | 0.00 | 2.097 | 5.67 | 0.51 | 4.4 | 95.6 | 0.0 | 1.18 | 0.37 | 0.79 | 0.89 | 2.94 | 9693 | 1293 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GH5 | 0001 | 2023-10-13 | 2018-05-04 | 3.4 | 3.71 | — | 3.4 | 0.033 | 3.30 | 333.0 | 0.22 | 17.29 | 0.02 | 1.847 | 24.49 | 4.29 | 11.0 | 86.7 | 2.3 | -4.34 | 0.89 | 0.88 | 2.50 | 3.4 | 0.003 | 0.82 | 1.0 | 0.04 | 18.26 | 0.00 | 2.147 | 12.31 | 0.27 | 8.9 | 90.1 | 1.0 | -0.97 | 1.34 | 0.88 | 0.86 | 1.71 | 28316 | 3593 | 8 | 92 | 50 | 0 | 0 | logfile |
✔ | 8B1R | 15803 | 2023-10-10 | 2022-09-12 | 3.2 | 3.47 | 3.13 | 3.3 | 0.004 | 0.63 | 0.0 | 0.05 | 9.18 | 0.00 | 2.210 | 7.58 | 0.34 | 0.7 | 99.3 | 0.0 | 0.06 | 0.84 | 0.87 | 2.66 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 13.23 | 0.00 | 2.221 | 5.19 | 0.17 | 1.6 | 98.4 | 0.0 | 2.27 | 0.64 | 0.86 | 0.90 | 2.75 | 21953 | 2746 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6P19 | 20234 | 2023-10-13 | 2019-05-19 | 3.8 | 3.94 | 3.94 | 3.8 | 0.008 | 0.92 | 0.0 | 0.06 | 16.49 | 0.01 | 2.061 | 7.97 | 0.46 | 6.1 | 93.9 | 0.0 | -3.93 | 0.84 | 0.82 | 1.62 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 17.49 | 0.00 | 1.973 | 14.10 | 0.14 | 4.8 | 95.2 | 0.0 | -0.81 | 0.54 | 0.83 | 0.81 | 1.35 | 27416 | 3323 | 10 | 66 | 3 | 0 | 0 | logfile |
✔ | 7CKW | 30392 | 2023-10-07 | 2020-07-20 | 3.22 | 3.34 | — | 3.3 | 0.002 | 0.48 | 0.0 | 0.04 | 13.74 | 0.00 | 2.178 | 15.84 | 1.74 | 3.0 | 97.0 | 0.0 | -3.30 | 0.58 | 0.71 | 1.74 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.11 | 0.00 | 2.036 | 20.45 | 0.70 | 4.6 | 95.4 | 0.0 | -0.85 | 0.67 | 0.62 | 0.78 | 1.82 | 8103 | 1035 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ZoX | 11329 | 2023-10-12 | 2020-07-08 | 3.0 | 3.30 | — | 3.1 | 0.011 | 1.61 | 18.0 | 0.09 | 12.11 | 0.01 | 2.015 | 4.01 | 0.90 | 3.6 | 96.2 | 0.2 | 0.27 | 0.81 | 0.81 | 3.15 | 3.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.86 | 0.00 | 2.088 | 8.92 | 2.33 | 3.2 | 96.8 | 0.0 | 0.23 | 0.55 | 0.80 | 0.83 | 2.29 | 24696 | 3051 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 6GYN | 0093 | 2023-10-08 | 2018-06-30 | 3.4 | 3.66 | 3.52 | 3.6 | 0.008 | 0.85 | 0.0 | 0.05 | 9.32 | 0.01 | 2.273 | 3.08 | 0.00 | 4.7 | 95.3 | 0.0 | -2.56 | 0.66 | 0.83 | 3.51 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 13.28 | 0.00 | 2.227 | 6.55 | 0.23 | 2.7 | 97.3 | 0.0 | 2.35 | 0.50 | 0.64 | 0.83 | 2.23 | 16932 | 1980 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 7ANZ | 11835 | 2023-10-08 | 2020-10-13 | 3.6 | 2.50 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.05 | 15.89 | 0.00 | 2.277 | 4.54 | 0.31 | 6.5 | 93.4 | 0.2 | -5.88 | 0.77 | 0.74 | 1.50 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 17.57 | 0.00 | 2.104 | 10.67 | 0.52 | 6.5 | 93.5 | 0.0 | -0.61 | 0.66 | 0.78 | 0.76 | 1.10 | 16751 | 2041 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T2U | 10369 | 2023-10-11 | 2019-10-09 | 3.6 | 4.08 | — | 3.6 | 0.002 | 0.48 | 1.0 | 0.04 | 13.04 | 0.01 | 2.211 | 4.80 | 2.98 | 2.0 | 98.0 | 0.0 | -3.59 | 0.85 | 0.71 | 0.66 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 15.78 | 0.00 | 2.128 | 13.94 | 0.33 | 4.6 | 95.4 | 0.0 | 0.38 | 3.52 | 0.87 | 0.77 | 0.77 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 7oT9 | 13057 | 2023-10-04 | 2021-06-09 | 2.8 | 3.63 | 2.69 | 3.3 | 0.005 | 0.67 | 0.0 | 0.04 | 14.51 | 0.00 | 2.138 | 10.05 | 0.00 | 5.6 | 94.4 | 0.0 | 2.47 | 0.60 | 0.81 | 2.16 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.99 | 0.00 | 2.148 | 8.28 | 2.29 | 7.1 | 92.9 | 0.0 | 3.54 | 1.18 | 0.58 | 0.80 | 2.02 | 8410 | 1105 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2023-10-02 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.18 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.004 | 0.61 | 0.0 | 0.05 | 16.03 | 0.00 | 2.240 | 5.61 | 0.59 | 3.8 | 96.2 | 0.0 | -1.17 | 1.78 | 0.52 | 0.88 | 2.42 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |