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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UL5 | 26592 | 2024-03-10 | 2022-04-03 | 3.1 | 3.32 | 3.08 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 11.76 | 0.01 | 2.404 | 3.68 | 0.00 | 3.1 | 96.9 | 0.0 | -1.07 | 0.64 | 0.85 | 3.67 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 13.41 | 0.00 | 2.340 | 2.02 | 1.12 | 1.4 | 98.6 | 0.0 | 2.89 | 0.29 | 0.65 | 0.86 | 3.19 | 2773 | 371 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UPR | 26674 | 2024-03-15 | 2022-04-16 | 3.2 | 3.90 | 3.36 | 3.8 | 0.004 | 0.80 | 0.0 | 0.04 | 15.82 | 0.00 | 2.062 | 7.72 | 4.18 | 7.1 | 92.9 | 0.0 | -3.02 | 0.74 | 0.78 | 1.45 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 17.39 | 0.00 | 1.911 | 9.51 | 4.18 | 8.3 | 91.7 | 0.0 | 0.01 | 0.50 | 0.75 | 0.81 | 1.22 | 12780 | 1678 | 12 | 0 | 19 | 0 | 0 | logfile |
✘ | 6CSX | 7609 | 2024-03-19 | 2018-03-21 | 3.0 | 3.08 | — | 3.1 | 0.009 | 1.21 | 3.0 | 0.06 | 13.61 | 0.01 | 1.815 | 9.08 | 2.42 | 5.8 | 93.7 | 0.5 | -5.28 | 0.68 | 0.86 | 3.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23232 | 2999 | 6 | 0 | 19 | 0 | 0 | logfile |
✔ | 8AS6 | 15607 | 2024-03-15 | 2022-08-18 | 3.4 | 2.91 | 3.40 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 15.52 | 0.01 | 2.232 | 4.32 | 0.00 | 8.1 | 91.9 | 0.0 | -1.67 | 0.68 | 0.83 | 2.08 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 16.57 | 0.00 | 2.180 | 7.47 | 1.02 | 7.8 | 92.2 | 0.0 | -0.52 | 0.32 | 0.69 | 0.85 | 1.98 | 12784 | 1566 | 2 | 14 | 0 | 0 | 0 | logfile |
✔ | 7oCC | 12803 | 2024-03-15 | 2021-04-26 | 3.4 | 2.93 | — | 3.3 | 0.010 | 0.76 | 0.0 | 0.05 | 19.50 | 0.00 | 2.143 | 5.09 | 0.39 | 3.1 | 96.9 | 0.0 | -1.15 | 0.73 | 0.78 | 4.01 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 14.26 | 0.00 | 2.254 | 4.95 | 1.64 | 2.5 | 97.5 | 0.0 | 0.81 | 1.59 | 0.75 | 0.84 | 4.23 | 11202 | 1480 | 14 | 0 | 20 | 0 | 0 | logfile |
✔ | 7JPP | 22418 | 2024-03-16 | 2020-08-09 | 3.7 | 3.83 | — | 3.8 | 0.007 | 1.18 | 0.0 | 0.06 | 15.66 | 0.01 | 2.061 | 3.35 | 0.00 | 1.6 | 98.4 | 0.0 | -1.90 | 0.72 | 0.78 | 2.10 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 17.12 | 0.00 | 1.998 | 6.44 | 1.61 | 2.4 | 97.6 | 0.0 | 0.82 | 2.22 | 0.73 | 0.79 | 1.31 | 14872 | 1816 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 7KCM | 22816 | 2024-03-15 | 2020-10-06 | 3.43 | 3.27 | — | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 15.80 | 0.00 | 1.994 | 9.30 | 0.00 | 4.5 | 95.5 | 0.0 | 0.75 | 0.80 | 0.83 | 2.81 | 3.4 | 0.004 | 0.59 | 0.0 | 0.04 | 17.17 | 0.00 | 1.874 | 12.94 | 2.55 | 5.3 | 94.7 | 0.0 | -0.26 | 0.38 | 0.81 | 0.87 | 2.88 | 10838 | 1347 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 7U2o | 26317 | 2024-03-16 | 2022-02-24 | 3.1 | 3.39 | — | 3.3 | 0.007 | 0.84 | 0.0 | 0.05 | 13.06 | 0.00 | 2.101 | 37.92 | 0.00 | 6.5 | 93.5 | 0.0 | -4.77 | 0.56 | 0.82 | 4.39 | 3.3 | 0.004 | 0.79 | 0.0 | 0.05 | 15.08 | 0.00 | 2.147 | 13.39 | 4.17 | 4.3 | 95.7 | 0.0 | -0.54 | 0.76 | 0.54 | 0.82 | 3.41 | 14075 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7U2N | 26316 | 2024-03-16 | 2022-02-24 | 2.8 | 3.30 | — | 3.4 | 0.007 | 0.80 | 0.0 | 0.05 | 12.41 | 0.00 | 2.195 | 23.96 | 0.00 | 8.6 | 91.4 | 0.0 | -4.23 | 0.52 | 0.81 | 5.21 | 3.3 | 0.003 | 0.75 | 0.0 | 0.04 | 14.91 | 0.00 | 2.170 | 11.52 | 3.89 | 5.1 | 94.9 | 0.0 | -0.60 | 1.09 | 0.47 | 0.79 | 3.75 | 14080 | 1725 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7XQ0 | 33387 | 2024-03-10 | 2022-05-06 | 3.0 | 2.77 | 3.09 | 3.2 | 0.014 | 1.26 | 0.0 | 0.06 | 13.01 | 0.01 | 2.232 | 7.04 | 0.86 | 1.5 | 98.5 | 0.0 | -6.72 | 0.49 | 0.79 | 4.03 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 14.07 | 0.00 | 2.172 | 8.09 | 1.73 | 1.8 | 98.2 | 0.0 | 0.86 | 1.09 | 0.43 | 0.77 | 3.24 | 3320 | 402 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8F25 | 28807 | 2024-03-15 | 2022-11-07 | 2.6 | 3.22 | 2.78 | 2.9 | 0.007 | 0.79 | 0.0 | 0.05 | 12.02 | 0.00 | 2.123 | 4.52 | 0.00 | 4.0 | 96.0 | 0.0 | 2.44 | 0.86 | 0.89 | 3.57 | 2.9 | 0.004 | 0.57 | 1.0 | 0.05 | 15.48 | 0.00 | 2.121 | 7.51 | 2.31 | 3.2 | 96.8 | 0.0 | 1.91 | 1.15 | 0.82 | 0.88 | 2.65 | 70560 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WVE | 6690 | 2024-03-17 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.50 | 0.01 | 1.493 | 69.05 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.04 | 13.65 | 0.00 | 1.771 | 25.54 | 0.00 | 7.8 | 91.5 | 0.7 | -1.97 | 1.60 | 0.79 | 0.60 | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |
✔ | 6i3M | 4404 | 2024-03-23 | 2018-11-06 | 3.93 | 4.04 | 3.89 | 4.0 | 0.007 | 1.24 | 6.0 | 0.07 | 13.81 | 0.01 | 2.201 | 6.76 | 2.83 | 11.3 | 88.4 | 0.3 | -4.16 | 0.66 | 0.66 | 1.31 | 3.9 | 0.003 | 0.72 | 0.0 | 0.05 | 15.28 | 0.00 | 2.176 | 13.71 | 2.62 | 7.9 | 92.0 | 0.1 | -1.81 | 1.53 | 0.70 | 0.75 | 1.15 | 37012 | 4682 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V2L | 31655 | 2024-03-10 | 2021-08-09 | 3.3 | 3.14 | 3.24 | 3.1 | 0.008 | 1.07 | 1.0 | 0.10 | 23.68 | 0.00 | 2.214 | 5.68 | 0.09 | 6.7 | 93.1 | 0.2 | -0.61 | 0.78 | 0.87 | 2.42 | 3.1 | 0.006 | 0.64 | 0.0 | 0.04 | 23.59 | 0.00 | 2.079 | 8.07 | 1.73 | 7.2 | 92.7 | 0.1 | -0.22 | 0.26 | 0.79 | 0.88 | 2.07 | 53410 | 2621 | 24 | 1507 | 2 | 0 | 0 | logfile |
✔ | 8EEX | 28064 | 2024-03-17 | 2022-09-07 | 2.95 | 2.88 | 2.94 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 17.00 | 0.01 | 2.173 | 0.66 | 0.51 | 1.8 | 98.2 | 0.0 | -0.43 | 0.69 | 0.83 | 3.81 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 18.62 | 0.00 | 2.146 | 5.84 | 2.06 | 3.1 | 96.9 | 0.0 | 0.61 | 1.50 | 0.73 | 0.88 | 3.20 | 17082 | 2008 | 4 | 36 | 4 | 0 | 0 | logfile |
✔ | 7V2N | 31657 | 2024-03-25 | 2021-08-09 | 3.6 | 3.38 | 3.41 | 3.1 | 0.008 | 1.21 | 2.0 | 0.11 | 24.27 | 0.00 | 2.085 | 8.71 | 0.63 | 7.0 | 92.7 | 0.3 | -1.20 | 0.82 | 0.84 | 1.75 | 3.1 | 0.005 | 0.66 | 0.0 | 0.04 | 24.04 | 0.00 | 1.964 | 13.36 | 3.36 | 6.7 | 93.2 | 0.1 | -0.46 | 0.35 | 0.81 | 0.84 | 1.50 | 51020 | 2626 | 24 | 1394 | 2 | 0 | 0 | logfile |
✔ | 8CTi | 26991 | 2024-03-10 | 2022-05-14 | 3.6 | 3.83 | 3.60 | 3.7 | 0.011 | 0.79 | 0.0 | 0.04 | 20.28 | 0.00 | 2.164 | 11.82 | 0.49 | 3.1 | 96.9 | 0.0 | -1.49 | 0.67 | 0.63 | 1.75 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 19.98 | 0.00 | 2.187 | 16.31 | 4.14 | 4.6 | 95.4 | 0.0 | -0.84 | 2.64 | 0.70 | 0.65 | 1.26 | 5297 | 473 | 3 | 71 | 0 | 0 | 0 | logfile |
✔ | 6U5Z | 20659 | 2024-03-19 | 2019-08-28 | 3.5 | 3.66 | — | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 9.08 | 0.00 | 2.194 | 6.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.58 | 0.49 | 0.58 | 0.79 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 14.00 | 0.00 | 2.083 | 13.27 | 2.26 | 6.0 | 94.0 | 0.0 | -0.54 | 1.03 | 0.58 | 0.61 | 1.21 | 24606 | 3174 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L0L | 23098 | 2024-03-17 | 2020-12-11 | 2.85 | 2.42 | 2.89 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 13.08 | 0.00 | 2.198 | 3.31 | 0.05 | 2.7 | 97.3 | 0.0 | 0.68 | 0.71 | 0.79 | 3.88 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.47 | 0.00 | 2.244 | 5.33 | 2.14 | 2.4 | 97.6 | 0.0 | 0.74 | 0.38 | 0.72 | 0.81 | 3.67 | 17211 | 2166 | 18 | 0 | 15 | 0 | 0 | logfile |
✔ | 6ASX | 7002 | 2024-03-20 | 2017-08-25 | 3.8 | 3.97 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.07 | 13.67 | 0.01 | 2.065 | 4.57 | 0.26 | 9.7 | 90.3 | 0.1 | -4.16 | 0.79 | 0.83 | 2.44 | 3.9 | 0.003 | 0.67 | 0.0 | 0.05 | 16.92 | 0.00 | 2.071 | 8.08 | 2.18 | 5.4 | 94.6 | 0.0 | -0.84 | 1.63 | 0.79 | 0.83 | 1.87 | 26359 | 3179 | 10 | 73 | 3 | 0 | 0 | logfile |