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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7E8H | 31019 | 2024-03-24 | 2021-03-01 | 4.5 | 4.06 | 4.44 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 2.089 | 18.26 | 0.00 | 6.9 | 93.0 | 0.1 | -0.78 | 0.73 | 0.62 | — | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.28 | 0.00 | 2.118 | 20.71 | 0.00 | 8.1 | 91.9 | 0.0 | -1.10 | 0.43 | 0.78 | 0.73 | — | 44894 | 5576 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D97 | 27257 | 2024-03-16 | 2022-06-09 | 3.8 | 3.96 | 3.72 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 17.28 | 0.00 | 2.113 | 8.76 | 0.00 | 5.1 | 94.9 | 0.0 | -2.43 | 0.87 | 0.87 | 2.06 | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 17.90 | 0.00 | 2.199 | 7.80 | 0.85 | 3.5 | 96.5 | 0.0 | -0.19 | 0.41 | 0.87 | 0.86 | 1.95 | 13874 | 1600 | 3 | 42 | 4 | 0 | 0 | logfile |
✔ | 7Ni2 | 12349 | 2024-03-21 | 2021-02-11 | 2.89 | 3.11 | — | 3.0 | 0.007 | 0.70 | 0.0 | 0.05 | 11.38 | 0.00 | 2.198 | 11.77 | 0.00 | 3.2 | 96.8 | 0.0 | -1.51 | 0.78 | 0.86 | 2.96 | 3.0 | 0.003 | 0.69 | 0.0 | 0.05 | 14.52 | 0.00 | 2.203 | 9.55 | 1.15 | 3.0 | 97.0 | 0.0 | 0.58 | 0.50 | 0.77 | 0.87 | 2.05 | 31344 | 4080 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZC | 20956 | 2024-03-27 | 2019-11-14 | 4.5 | 5.36 | — | 5.2 | 0.018 | 1.84 | 8.0 | 0.10 | 10.97 | 0.01 | 1.850 | 6.87 | 0.26 | 5.0 | 94.4 | 0.6 | -0.66 | 0.48 | 0.67 | — | 5.2 | 0.003 | 0.80 | 0.0 | 0.05 | 13.33 | 0.00 | 2.066 | 21.54 | 0.03 | 8.5 | 91.4 | 0.1 | -1.22 | 1.80 | 0.51 | 0.72 | — | 150312 | 19473 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ND5 | 12276 | 2024-03-20 | 2021-01-30 | 3.4 | 3.66 | — | 3.5 | 0.003 | 0.56 | 0.0 | 0.05 | 11.50 | 0.00 | 2.167 | 4.20 | 0.32 | 3.6 | 96.3 | 0.0 | -0.49 | 0.77 | 0.73 | 1.55 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.57 | 0.00 | 2.137 | 9.29 | 2.53 | 3.9 | 95.9 | 0.1 | 0.35 | 1.10 | 0.80 | 0.80 | 1.76 | 26710 | 3406 | 19 | 0 | 49 | 0 | 0 | logfile |
✔ | 8BFN | 16020 | 2024-03-22 | 2022-10-26 | 3.52 | 3.09 | 3.52 | 3.3 | 0.005 | 0.67 | 0.0 | 0.04 | 19.10 | 0.00 | 1.921 | 45.20 | 0.48 | 5.6 | 94.2 | 0.2 | 0.87 | 0.67 | 0.79 | 1.58 | 3.3 | 0.003 | 0.73 | 0.0 | 0.04 | 19.35 | 0.00 | 2.153 | 13.52 | 3.79 | 6.1 | 93.8 | 0.2 | 0.33 | 0.55 | 0.64 | 0.79 | 1.63 | 33400 | 4164 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 8DHA | 27434 | 2024-03-10 | 2022-06-25 | 3.8 | 4.85 | 4.37 | 4.8 | 0.004 | 0.76 | 0.0 | 0.05 | 17.10 | 0.01 | 2.155 | 15.08 | 0.49 | 4.8 | 95.2 | 0.0 | 0.08 | 0.69 | 0.73 | 0.68 | 4.8 | 0.003 | 0.74 | 0.0 | 0.05 | 17.63 | 0.00 | 2.114 | 11.38 | 4.44 | 4.6 | 95.4 | 0.0 | -0.27 | 0.53 | 0.69 | 0.72 | 0.84 | 3510 | 439 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 7ZHJ | 14733 | 2024-03-16 | 2022-04-06 | 3.53 | 3.10 | 3.39 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 13.02 | 0.00 | 2.151 | 8.47 | 0.04 | 3.6 | 96.4 | 0.0 | -1.71 | 0.73 | 0.78 | 2.05 | 3.3 | 0.004 | 0.63 | 1.0 | 0.05 | 15.68 | 0.00 | 1.882 | 8.92 | 2.56 | 2.9 | 97.1 | 0.0 | -1.24 | 1.53 | 0.74 | 0.82 | 2.44 | 74346 | 9528 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UV5 | 20904 | 2024-03-22 | 2019-11-01 | 3.4 | 3.51 | — | 3.4 | 0.010 | 1.06 | 0.0 | 0.06 | 15.42 | 0.01 | 2.199 | 6.68 | 0.50 | 6.5 | 93.3 | 0.2 | -4.19 | 0.72 | 0.68 | 2.34 | 3.4 | 0.004 | 0.65 | 0.0 | 0.05 | 16.27 | 0.00 | 2.158 | 10.58 | 1.69 | 6.2 | 93.8 | 0.0 | -1.11 | 0.49 | 0.79 | 0.80 | 1.69 | 31954 | 4084 | 11 | 0 | 12 | 3 | 0 | logfile |
✔ | 7Q9P | 13875 | 2024-03-21 | 2021-11-12 | 4.5 | 5.25 | — | 4.6 | 0.005 | 0.66 | 2.0 | 0.05 | 10.95 | 0.00 | 1.893 | 9.35 | 1.20 | 5.0 | 94.6 | 0.4 | -0.75 | 0.81 | 0.66 | — | 4.7 | 0.005 | 0.76 | 0.0 | 0.05 | 11.31 | 0.00 | 1.992 | 24.76 | 0.00 | 6.8 | 93.0 | 0.2 | -1.16 | 1.60 | 0.84 | 0.74 | — | 30494 | 3807 | 24 | 0 | 52 | 0 | 0 | logfile |
✔ | 7CFN | 30345 | 2024-03-11 | 2020-06-27 | 3.0 | 3.32 | — | 3.3 | 0.008 | 1.04 | 0.0 | 0.06 | 10.75 | 0.01 | 1.979 | 7.47 | 0.12 | 2.6 | 97.4 | 0.0 | -2.77 | 0.62 | 0.79 | 4.20 | 3.3 | 0.006 | 0.71 | 0.0 | 0.05 | 13.96 | 0.00 | 2.078 | 7.35 | 1.66 | 2.5 | 97.5 | 0.0 | 0.81 | 0.53 | 0.62 | 0.80 | 3.14 | 8112 | 1031 | 5 | 0 | 4 | 1 | 0 | logfile |
✔ | 7UN9 | 26617 | 2024-03-17 | 2022-04-09 | 3.3 | 3.14 | 3.20 | 3.3 | 0.017 | 0.90 | 0.0 | 0.04 | 16.41 | 0.01 | 1.849 | 7.74 | 0.05 | 3.2 | 96.8 | 0.0 | 0.82 | 0.64 | 0.83 | 3.05 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 17.68 | 0.00 | 2.154 | 8.88 | 2.81 | 2.0 | 98.0 | 0.0 | 1.04 | 0.44 | 0.67 | 0.86 | 2.61 | 17675 | 2161 | 18 | 0 | 89 | 0 | 0 | logfile |
✔ | 8G6L | 29773 | 2024-03-18 | 2023-02-15 | 3.3 | 2.99 | 3.20 | 3.2 | 0.004 | 0.73 | 0.0 | 0.04 | 16.55 | 0.00 | 2.092 | 3.26 | 0.09 | 2.2 | 97.8 | 0.0 | 1.80 | 0.58 | 0.74 | 2.16 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 16.79 | 0.00 | 1.950 | 6.29 | 1.12 | 2.6 | 97.4 | 0.0 | 2.26 | 0.39 | 0.60 | 0.80 | 2.22 | 21438 | 1379 | 7 | 0 | 0 | 0 | 10651 | logfile |
✔ | 7UWQ | 26838 | 2024-03-18 | 2022-05-03 | 3.05 | 3.55 | 3.19 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 13.81 | 0.00 | 2.313 | 3.18 | 0.00 | 3.0 | 97.0 | 0.0 | -0.63 | 0.70 | 0.86 | 3.23 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 15.07 | 0.00 | 2.280 | 4.63 | 0.96 | 1.4 | 98.6 | 0.0 | 0.58 | 0.24 | 0.72 | 0.87 | 2.48 | 20538 | 2598 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXA | 28656 | 2024-03-10 | 2022-10-25 | 3.14 | 3.45 | 3.09 | 3.4 | 0.004 | 0.54 | 0.0 | 0.03 | 22.74 | 0.00 | 2.223 | 15.79 | 0.40 | 3.6 | 96.4 | 0.0 | 0.27 | 0.61 | 0.69 | 4.07 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 22.62 | 0.00 | 2.172 | 15.58 | 3.64 | 3.6 | 96.4 | 0.0 | 0.43 | 1.14 | 0.60 | 0.68 | 3.89 | 5539 | 341 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 6JNF | 9851 | 2024-03-11 | 2019-03-14 | 3.81 | 3.96 | 3.73 | 4.0 | 0.009 | 1.23 | 0.0 | 0.06 | 17.48 | 0.01 | 2.304 | 5.24 | 1.02 | 16.7 | 83.3 | 0.0 | -6.16 | 0.64 | 0.82 | 1.38 | 4.0 | 0.003 | 0.85 | 0.0 | 0.04 | 18.09 | 0.00 | 2.195 | 9.93 | 5.12 | 11.4 | 88.6 | 0.0 | -2.62 | 1.46 | 0.67 | 0.82 | 1.14 | 7271 | 924 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 8CVi | 27008 | 2024-03-13 | 2022-05-18 | 3.4 | 3.54 | 3.20 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.53 | 0.00 | 2.073 | 8.79 | 0.05 | 4.0 | 95.9 | 0.1 | 1.49 | 0.55 | 0.83 | 1.22 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.00 | 2.089 | 10.90 | 1.79 | 4.0 | 96.0 | 0.0 | 3.61 | 2.20 | 0.58 | 0.85 | 0.95 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D6Q | 7808 | 2024-03-21 | 2018-04-22 | 3.45 | 3.57 | — | 3.5 | 0.006 | 0.74 | 0.0 | 0.05 | 10.87 | 0.00 | 1.778 | 9.85 | 0.06 | 9.9 | 90.1 | 0.0 | -4.46 | 0.79 | 0.77 | 2.28 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.77 | 0.00 | 2.121 | 10.29 | 3.10 | 4.5 | 95.5 | 0.0 | -0.62 | 0.89 | 0.82 | 0.84 | 1.67 | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✔ | 7WD0 | 32431 | 2024-03-22 | 2021-12-20 | 3.3 | 3.23 | — | 3.0 | 0.003 | 0.69 | 0.0 | 0.05 | 12.95 | 0.01 | 2.287 | 2.93 | 0.17 | 3.7 | 96.3 | 0.0 | -3.08 | 0.75 | 0.67 | 1.53 | 3.0 | 0.002 | 0.62 | 0.0 | 0.04 | 15.32 | 0.00 | 2.136 | 9.55 | 2.12 | 4.0 | 96.0 | 0.0 | -0.36 | 1.81 | 0.78 | 0.74 | 1.55 | 31996 | 4099 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ooR | 17026 | 2024-03-20 | 2023-04-05 | 2.87 | 2.10 | 2.97 | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 14.05 | 0.01 | 1.914 | 2.74 | 0.00 | 2.7 | 97.3 | 0.0 | -0.86 | 0.89 | 0.88 | 4.12 | 2.7 | 0.003 | 0.63 | 0.0 | 0.04 | 16.54 | 0.00 | 2.045 | 6.39 | 1.16 | 1.9 | 98.1 | 0.0 | 0.92 | 1.11 | 0.90 | 0.88 | 2.79 | 28371 | 3626 | 17 | 0 | 8 | 0 | 0 | logfile |