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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MK2 | 23884 | 2024-03-10 | 2021-04-21 | 3.8 | 3.60 | 3.84 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 14.23 | 0.00 | 2.228 | 8.87 | 0.00 | 7.7 | 92.3 | 0.0 | -1.60 | 0.63 | 0.77 | 0.81 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 16.16 | 0.00 | 2.216 | 8.59 | 2.62 | 5.1 | 94.9 | 0.0 | -0.62 | 1.43 | 0.62 | 0.76 | 0.79 | 5333 | 708 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2024-03-10 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L1F | 23109 | 2024-03-11 | 2020-12-14 | 3.89 | 2.82 | — | 2.2 | 0.008 | 1.36 | 3.0 | 0.08 | 14.82 | 0.01 | 2.323 | 3.11 | 0.00 | 6.6 | 93.4 | 0.0 | -4.38 | 0.72 | 0.70 | 2.25 | 2.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.50 | 0.00 | 2.058 | 11.86 | 3.03 | 5.2 | 94.8 | 0.0 | -1.28 | 0.50 | 0.73 | 0.71 | 1.49 | 8825 | 1009 | 5 | 31 | 4 | 0 | 0 | logfile |
✘ | 8F6T | 28890 | 2024-03-10 | 2022-11-17 | 2.76 | 3.61 | 2.91 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.87 | 0.00 | 2.119 | 4.79 | 0.00 | 5.4 | 94.6 | 0.0 | 0.80 | 0.65 | 0.86 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3473 | 428 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2024-03-10 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.03 | 16.46 | 0.00 | 2.358 | 8.83 | 0.00 | 6.7 | 93.3 | 0.0 | 0.64 | 3.59 | 0.60 | 0.73 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUT | 20205 | 2024-03-15 | 2019-05-05 | 2.6 | 2.84 | — | 2.9 | 0.007 | 0.93 | 0.0 | 0.06 | 12.60 | 0.01 | 2.099 | 6.06 | 0.00 | 4.8 | 95.2 | 0.0 | -2.10 | 0.75 | 0.86 | 4.03 | 2.9 | 0.004 | 0.64 | 0.0 | 0.05 | 15.42 | 0.01 | 2.121 | 6.24 | 2.45 | 3.2 | 96.8 | 0.0 | -0.21 | 0.42 | 0.75 | 0.88 | 3.65 | 11505 | 1494 | 6 | 0 | 0 | 226 | 0 | logfile |
✔ | 7Q6Z | 13860 | 2024-03-14 | 2021-11-09 | 3.59 | 3.59 | 3.63 | 3.6 | 0.008 | 0.69 | 0.0 | 0.04 | 14.58 | 0.00 | 1.945 | 7.30 | 0.00 | 4.8 | 95.2 | 0.0 | 1.64 | 0.56 | 0.72 | 2.00 | 3.7 | 0.004 | 0.55 | 0.0 | 0.04 | 15.30 | 0.00 | 1.959 | 8.62 | 1.55 | 4.9 | 95.1 | 0.0 | 1.66 | 0.39 | 0.56 | 0.72 | 1.71 | 9754 | 597 | 3 | 0 | 4 | 0 | 4784 | logfile |
✔ | 7F46 | 31444 | 2024-03-11 | 2021-06-17 | 4.79 | 5.15 | — | 3.3 | 0.006 | 0.84 | 0.0 | 0.05 | 13.32 | 0.01 | 2.218 | 12.18 | 0.00 | 8.9 | 91.1 | 0.0 | -2.90 | 0.77 | 0.60 | — | 4.4 | 0.003 | 0.78 | 0.0 | 0.05 | 12.93 | 0.01 | 2.102 | 17.68 | 0.00 | 6.8 | 93.2 | 0.0 | -1.99 | 1.91 | 0.79 | 0.63 | — | 6564 | 842 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7QEV | 13942 | 2024-03-10 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 16.15 | 0.00 | 2.144 | 6.70 | 1.17 | 2.4 | 97.6 | 0.0 | 2.12 | 1.66 | 0.79 | 0.86 | 2.48 | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |
✘ | 6V4U | 21048 | 2024-03-11 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUC | 20202 | 2024-03-10 | 2019-05-04 | 2.8 | 3.00 | — | 3.0 | 0.008 | 1.15 | 1.0 | 0.08 | 9.03 | 0.01 | 2.131 | 6.96 | 0.00 | 3.5 | 96.5 | 0.0 | -2.32 | 0.62 | 0.88 | 5.44 | 3.0 | 0.003 | 0.57 | 0.0 | 0.05 | 14.25 | 0.01 | 2.212 | 3.88 | 2.40 | 2.9 | 97.1 | 0.0 | -0.35 | 1.17 | 0.65 | 0.90 | 3.86 | 3899 | 483 | 1 | 0 | 1 | 124 | 0 | logfile |
✔ | 7LXX | 23578 | 2024-03-10 | 2021-03-05 | 3.0 | 2.96 | 3.03 | 3.2 | 0.012 | 1.19 | 0.0 | 0.06 | 9.98 | 0.01 | 2.519 | 0.57 | 0.00 | 3.6 | 96.4 | 0.0 | 0.69 | 0.75 | 0.78 | 4.22 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 13.95 | 0.00 | 2.191 | 9.07 | 2.81 | 3.3 | 96.7 | 0.0 | -0.48 | 1.60 | 0.77 | 0.82 | 4.40 | 2740 | 352 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 7R1D | 14239 | 2024-03-10 | 2022-02-02 | 3.5 | 3.51 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 13.61 | 0.01 | 2.097 | 17.88 | 0.00 | 7.1 | 92.9 | 0.0 | -1.31 | 0.77 | 0.79 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5183 | 653 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZU | 22574 | 2024-03-10 | 2020-09-02 | 3.1 | 3.26 | 3.10 | 3.3 | 0.015 | 1.34 | 0.0 | 0.08 | 9.38 | 0.01 | 2.509 | 0.78 | 0.00 | 3.3 | 96.7 | 0.0 | 0.23 | 0.69 | 0.76 | 4.15 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.79 | 0.00 | 2.256 | 5.19 | 0.49 | 1.6 | 98.4 | 0.0 | 0.86 | 1.61 | 0.71 | 0.80 | 4.04 | 1987 | 248 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2024-03-20 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 14.26 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.004 | 0.69 | 0.0 | 0.04 | 14.72 | 0.01 | 1.866 | 21.82 | 0.00 | 6.4 | 93.6 | 0.0 | -1.05 | 2.35 | 0.80 | 0.65 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7JZM | 22533 | 2024-03-10 | 2020-09-02 | 3.5 | 3.74 | 3.50 | 3.7 | 0.015 | 1.38 | 0.0 | 0.08 | 9.53 | 0.01 | 2.420 | 1.01 | 0.00 | 2.0 | 98.0 | 0.0 | 0.75 | 0.75 | 0.78 | 4.01 | 3.7 | 0.002 | 0.65 | 0.0 | 0.04 | 14.61 | 0.00 | 2.183 | 8.12 | 1.49 | 3.1 | 96.9 | 0.0 | 0.90 | 1.24 | 0.76 | 0.80 | 3.36 | 2033 | 258 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WLC | 32581 | 2024-03-10 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 16.01 | 0.00 | 2.156 | 17.48 | 3.34 | 9.4 | 90.6 | 0.0 | -1.65 | 0.49 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2024-03-10 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.17 | 0.0 | 0.04 | 10.44 | 0.00 | 2.149 | 15.78 | 0.00 | 35.3 | 64.7 | 0.0 | -5.53 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D69 | 30591 | 2024-03-15 | 2020-09-29 | 3.57 | 3.34 | — | 3.6 | 0.009 | 0.88 | 0.0 | 0.05 | 28.86 | 0.01 | 2.062 | 19.76 | 0.00 | 5.2 | 94.8 | 0.0 | -1.18 | 0.78 | 0.80 | 2.26 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 28.41 | 0.00 | 2.173 | 15.69 | 2.91 | 3.7 | 96.3 | 0.0 | 1.48 | 1.15 | 0.77 | 0.79 | 1.53 | 10857 | 727 | 10 | 250 | 0 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2024-03-11 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.05 | 12.88 | 0.00 | 2.263 | 7.54 | 0.00 | 16.2 | 83.8 | 0.0 | -5.34 | 1.15 | 0.72 | 0.70 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |