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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WM0 | 32596 | 2023-08-09 | 2022-01-14 | 3.35 | 3.62 | — | 3.7 | 0.009 | 1.22 | 0.0 | 0.08 | 12.61 | 0.01 | 2.405 | 9.08 | 0.28 | 5.4 | 94.6 | 0.0 | -2.87 | 0.69 | 0.56 | 0.97 | 3.6 | 0.004 | 0.84 | 0.0 | 0.05 | 15.59 | 0.00 | 2.067 | 16.04 | 0.55 | 6.4 | 93.6 | 0.0 | -1.58 | 1.76 | 0.76 | 0.68 | 1.10 | 3376 | 432 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XJH | 22210 | 2023-08-10 | 2020-06-23 | 3.6 | 2.83 | — | 3.6 | 0.019 | 1.64 | 0.0 | 0.09 | 11.22 | 0.01 | 2.173 | 3.03 | 0.48 | 1.5 | 98.5 | 0.0 | 1.10 | 0.66 | 0.74 | 1.98 | 3.7 | 0.003 | 0.71 | 0.0 | 0.05 | 16.12 | 0.00 | 1.926 | 13.34 | 0.36 | 2.4 | 97.6 | 0.0 | 0.82 | 1.65 | 0.67 | 0.76 | 1.58 | 7596 | 940 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XY1 | 33507 | 2023-08-12 | 2022-05-31 | 3.3 | 3.36 | — | 3.3 | 0.005 | 0.76 | 6.0 | 0.06 | 13.22 | 0.01 | 2.035 | 16.43 | 0.97 | 8.4 | 91.0 | 0.6 | -2.22 | 0.76 | 0.83 | 3.69 | 3.3 | 0.003 | 0.63 | 0.0 | 0.05 | 14.80 | 0.00 | 2.074 | 10.97 | 0.49 | 9.9 | 89.9 | 0.2 | -2.36 | 0.32 | 0.77 | 0.85 | 3.23 | 11550 | 1536 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i2i | 0331 | 2023-08-10 | 2018-11-01 | 3.6 | 3.72 | — | 3.7 | 0.009 | 1.17 | 0.0 | 0.06 | 12.38 | 0.01 | 2.019 | 7.46 | 0.28 | 7.1 | 92.9 | 0.0 | -5.22 | 0.74 | 0.74 | 2.16 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 15.73 | 0.00 | 1.880 | 15.21 | 0.69 | 5.1 | 94.9 | 0.0 | -1.91 | 0.88 | 0.76 | 0.75 | 1.76 | 6830 | 856 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2023-08-09 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.83 | 0.0 | 0.04 | 17.52 | 0.00 | 2.197 | 15.77 | 0.60 | 7.4 | 91.9 | 0.7 | -1.61 | 2.37 | 0.75 | 0.84 | 2.85 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-08-08 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SRQ | 25401 | 2023-08-09 | 2021-11-08 | 2.7 | 2.17 | — | 1.9 | 0.008 | 0.80 | 0.0 | 0.05 | 13.54 | 0.01 | 2.296 | 8.67 | 1.50 | 2.8 | 97.2 | 0.0 | 0.29 | 0.70 | 0.72 | 4.55 | 2.7 | 0.004 | 0.76 | 0.0 | 0.04 | 15.44 | 0.00 | 2.264 | 8.93 | 3.50 | 3.2 | 96.8 | 0.0 | 0.20 | 0.48 | 0.72 | 0.77 | 3.78 | 1960 | 254 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2023-08-20 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 13.61 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.005 | 0.80 | 0.0 | 0.04 | 13.93 | 0.01 | 1.842 | 25.56 | 0.00 | 9.2 | 90.8 | 0.0 | -1.77 | 4.62 | 0.74 | 0.69 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 7o3C | 12703 | 2023-08-26 | 2021-04-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48532 | 5967 | 51 | 0 | 41 | 0 | 0 | logfile |
✔ | 6oUC | 20202 | 2023-08-09 | 2019-05-04 | 2.8 | 3.00 | — | 3.0 | 0.008 | 1.15 | 1.0 | 0.08 | 9.03 | 0.01 | 2.131 | 6.96 | 0.00 | 3.5 | 96.5 | 0.0 | -2.32 | 0.62 | 0.88 | 5.44 | 3.0 | 0.003 | 0.57 | 0.0 | 0.05 | 14.54 | 0.01 | 2.233 | 4.42 | 0.96 | 2.7 | 97.3 | 0.0 | -0.27 | 1.18 | 0.64 | 0.90 | 3.37 | 3899 | 483 | 1 | 0 | 1 | 124 | 0 | logfile |
✔ | 7VV6 | 32139 | 2023-08-09 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.04 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 17.06 | 0.00 | 2.195 | 6.88 | 0.00 | 3.3 | 96.7 | 0.0 | 2.95 | 0.67 | 0.65 | 0.86 | 1.49 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-08-09 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-08-09 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DXH | 30909 | 2023-08-16 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20054 | 2150 | 31 | 0 | 69 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2023-08-20 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 13.49 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 14.03 | 0.00 | 1.901 | 21.72 | 0.00 | 6.5 | 93.5 | 0.0 | -1.27 | 2.38 | 0.80 | 0.65 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6oWT | 20217 | 2023-08-12 | 2019-05-10 | 3.8 | 4.08 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 12.40 | 0.01 | 2.304 | 4.41 | 2.31 | 4.4 | 95.6 | 0.0 | -3.98 | 0.77 | 0.76 | 1.52 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 15.26 | 0.00 | 2.103 | 13.27 | 0.27 | 5.2 | 94.8 | 0.0 | 0.31 | 0.68 | 0.78 | 0.77 | 0.91 | 11649 | 1575 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WLC | 32581 | 2023-08-09 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 16.00 | 0.00 | 2.188 | 18.56 | 0.56 | 8.3 | 91.7 | 0.0 | -1.72 | 0.54 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G59 | 29736 | 2023-08-10 | 2023-02-12 | 2.64 | 2.58 | — | 2.9 | 0.005 | 0.76 | 1.0 | 0.05 | 12.18 | 0.01 | 1.930 | 10.26 | 0.22 | 3.8 | 96.1 | 0.1 | -0.15 | 0.82 | 0.76 | 2.19 | 2.9 | 0.007 | 0.75 | 0.0 | 0.05 | 15.37 | 0.01 | 2.117 | 10.26 | 1.32 | 4.4 | 95.6 | 0.0 | 0.52 | 0.50 | 0.82 | 0.80 | 1.87 | 8583 | 1118 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2023-08-09 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.78 | 0.0 | 0.04 | 17.71 | 0.00 | 2.103 | 10.58 | 0.46 | 7.9 | 91.5 | 0.6 | 0.80 | 1.24 | 0.72 | 0.85 | 3.33 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XQo | 22291 | 2023-08-09 | 2020-07-09 | 3.1 | 3.54 | — | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.61 | 0.00 | 1.956 | 9.56 | 3.52 | 4.4 | 95.6 | 0.0 | -2.83 | 0.76 | 0.75 | 2.70 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 16.64 | 0.00 | 2.162 | 11.50 | 0.70 | 2.6 | 97.4 | 0.0 | 0.54 | 1.26 | 0.78 | 0.78 | 1.48 | 4301 | 560 | 4 | 0 | 4 | 0 | 0 | logfile |