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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QGH | 13955 | 2023-08-31 | 2021-12-08 | 4.48 | 9.26 | — | 4.8 | 0.016 | 1.62 | 58.0 | 0.11 | 15.10 | 0.01 | 0.197 | 5.44 | 1.41 | 8.8 | 90.2 | 1.0 | -4.05 | 0.66 | 0.38 | — | 4.5 | 0.006 | 0.93 | 1.0 | 0.05 | 18.29 | 0.01 | 1.254 | 59.68 | 0.04 | 11.4 | 88.5 | 0.1 | -2.68 | 2.11 | 0.85 | 0.78 | — | 147973 | 6046 | 58 | 4716 | 3 | 9 | 0 | logfile |
✘ | 7MT2 | 23974 | 2023-08-31 | 2021-05-12 | 2.76 | 2.45 | — | 2.9 | 0.007 | 0.77 | 0.0 | 0.04 | 13.38 | 0.01 | 2.005 | 2.23 | 0.07 | 6.3 | 93.6 | 0.1 | -4.55 | 0.85 | 0.87 | 4.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148054 | 5629 | 69 | 4835 | 449 | 0 | 0 | logfile |
✘ | 3JCJ | 6559 | 2023-08-31 | 2015-12-18 | 3.7 | 3.96 | — | 3.8 | 0.007 | 1.05 | 18.0 | 0.10 | 12.45 | 0.01 | 1.344 | 2.06 | 0.39 | 9.2 | 89.0 | 1.8 | -3.55 | 0.80 | 0.75 | 1.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148347 | 6249 | 82 | 4594 | 197 | 837 | 0 | logfile |
✘ | 7ST6 | 25420 | 2023-08-31 | 2021-11-12 | 3.0 | 3.74 | 3.18 | 3.0 | 0.008 | 0.96 | 1.0 | 0.08 | 15.23 | 0.01 | 1.404 | 9.99 | 0.71 | 10.6 | 89.0 | 0.4 | -4.95 | 0.90 | 0.84 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147982 | 5721 | 58 | 4811 | 0 | 0 | 0 | logfile |
✔ | 8A3L | 15116 | 2023-08-31 | 2022-06-08 | 3.42 | 3.28 | 3.30 | 3.3 | 0.008 | 0.76 | 2.0 | 0.05 | 15.62 | 0.02 | 1.607 | 10.99 | 2.12 | 7.5 | 91.9 | 0.6 | -0.87 | 0.78 | 0.80 | 2.45 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.97 | 0.01 | 1.744 | 10.84 | 0.35 | 5.0 | 94.9 | 0.1 | -0.71 | 1.06 | 0.84 | 0.85 | 2.10 | 147640 | 5876 | 65 | 4722 | 316 | 0 | 0 | logfile |
✔ | 6oGF | 20056 | 2023-08-31 | 2019-04-02 | 3.9 | 4.57 | — | 3.4 | 0.006 | 0.92 | 0.0 | 0.08 | 13.45 | 0.01 | 2.252 | 16.06 | 0.70 | 12.4 | 86.0 | 1.5 | -4.77 | 0.91 | 0.85 | 0.79 | 3.4 | 0.006 | 0.73 | 0.0 | 0.04 | 16.51 | 0.00 | 1.931 | 29.51 | 0.74 | 11.4 | 88.4 | 0.1 | -2.51 | 2.05 | 0.91 | 0.87 | 0.71 | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✘ | 7BTB | 30174 | 2023-08-31 | 2020-04-01 | 3.22 | 3.27 | — | 3.2 | 0.006 | 0.81 | 0.0 | 0.05 | 18.73 | 0.01 | 1.986 | 9.80 | 9.99 | 10.9 | 88.7 | 0.4 | -4.04 | 0.67 | 0.80 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147931 | 9417 | 58 | 3402 | 7 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-08-31 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✘ | 7o1C | 12695 | 2023-08-31 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 14.38 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✘ | 7MT3 | 23975 | 2023-08-31 | 2021-05-12 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.52 | — | — | 4.06 | 2.9 | 0.007 | 0.67 | 0.0 | 0.04 | 14.24 | 0.01 | 1.022 | 6.18 | 1.92 | 6.5 | 93.4 | 0.1 | -1.21 | — | 0.84 | 0.87 | 3.14 | 147942 | 5616 | 68 | 4835 | 441 | 0 | 0 | logfile |
✘ | 5o2R | 3730 | 2023-08-31 | 2017-05-22 | 3.4 | 3.45 | — | 3.4 | 0.011 | 1.26 | 7.0 | 0.06 | 15.47 | 0.01 | 0.776 | 7.13 | 1.03 | 11.6 | 87.9 | 0.5 | -5.11 | 0.77 | 0.80 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147985 | 6205 | 58 | 4643 | 0 | 0 | 0 | logfile |
✔ | 6oGG | 20057 | 2023-08-31 | 2019-04-02 | 4.2 | 5.09 | — | 3.4 | 0.006 | 0.85 | 0.0 | 0.07 | 13.94 | 0.01 | 2.108 | 14.59 | 0.56 | 10.6 | 89.3 | 0.1 | -4.88 | 0.87 | 0.76 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 17.77 | 0.01 | 1.791 | 35.74 | 0.06 | 12.4 | 87.5 | 0.1 | -3.21 | 1.77 | 0.88 | 0.82 | — | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✘ | 5LZE | 4125 | 2023-08-31 | 2016-09-29 | 3.5 | 3.59 | 3.51 | 3.5 | 0.012 | 1.24 | 14.0 | 0.08 | 14.19 | 0.02 | 2.158 | 3.96 | 0.72 | 7.7 | 90.1 | 2.2 | -3.34 | 0.76 | 0.87 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148018 | 5817 | 59 | 4782 | 2 | 0 | 0 | logfile |
✔ | 6oG7 | 20052 | 2023-08-31 | 2019-04-01 | 3.3 | 4.37 | — | 3.1 | 0.006 | 0.90 | 0.0 | 0.08 | 13.50 | 0.01 | 2.140 | 16.95 | 0.74 | 11.4 | 87.1 | 1.4 | -4.43 | 0.91 | 0.84 | 0.96 | 3.1 | 0.005 | 0.69 | 0.0 | 0.04 | 16.09 | 0.00 | 1.948 | 24.36 | 0.72 | 10.7 | 89.2 | 0.1 | -2.13 | 1.53 | 0.92 | 0.89 | 0.82 | 147794 | 6113 | 55 | 4657 | 0 | 0 | 0 | logfile |
✘ | 7JSZ | 22464 | 2023-08-31 | 2020-08-16 | 3.7 | 4.30 | 3.93 | 4.0 | 0.005 | 0.96 | 2.0 | 0.08 | 13.65 | 0.01 | 2.227 | 11.91 | 0.88 | 11.0 | 87.0 | 2.0 | -5.09 | 0.86 | 0.85 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147860 | 6144 | 57 | 4655 | 0 | 0 | 0 | logfile |
✔ | 5LZF | 4126 | 2023-08-31 | 2016-09-29 | 4.6 | 4.86 | 4.79 | 4.6 | 0.008 | 1.17 | 5.0 | 0.08 | 14.20 | 0.02 | 2.141 | 4.71 | 0.02 | 7.1 | 90.8 | 2.1 | -2.74 | 0.83 | 0.85 | — | 4.6 | 0.004 | 0.77 | 0.0 | 0.04 | 16.15 | 0.01 | 1.982 | 27.08 | 0.02 | 8.8 | 90.8 | 0.5 | -2.04 | 2.48 | 0.83 | 0.85 | — | 148005 | 5824 | 58 | 4779 | 2 | 0 | 0 | logfile |
✘ | 5X8P | 6709 | 2023-08-30 | 2017-03-03 | 3.4 | 3.42 | — | 3.4 | 0.008 | 1.05 | 8.0 | 0.05 | 14.94 | 0.01 | 1.051 | 8.93 | 0.76 | 10.9 | 88.5 | 0.6 | -4.53 | 0.78 | 0.75 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147126 | 6323 | 58 | 4508 | 0 | 0 | 0 | logfile |
✔ | 6SZS | 10353 | 2023-08-30 | 2019-10-02 | 3.06 | 3.27 | — | 3.2 | 0.008 | 0.93 | 1.0 | 0.05 | 15.95 | 0.01 | 2.211 | 4.87 | 0.56 | 7.5 | 92.5 | 0.1 | -3.63 | 0.88 | 0.85 | 2.68 | 3.2 | 0.006 | 0.67 | 1.0 | 0.04 | 16.16 | 0.00 | 2.028 | 12.17 | 0.73 | 7.9 | 92.0 | 0.1 | -1.15 | 0.32 | 0.89 | 0.87 | 2.21 | 147361 | 6100 | 56 | 4646 | 0 | 0 | 0 | logfile |
✔ | 7YEV | 33778 | 2023-08-30 | 2022-07-06 | 3.6 | 3.85 | 3.59 | 3.8 | 0.006 | 1.01 | 3.0 | 0.07 | 9.92 | 0.01 | 1.289 | 5.98 | 0.18 | 6.9 | 93.0 | 0.1 | -3.55 | 0.52 | 0.85 | 2.42 | 3.8 | 0.003 | 0.69 | 1.0 | 0.04 | 14.22 | 0.00 | 2.076 | 10.38 | 0.44 | 5.2 | 94.8 | 0.0 | -0.33 | 0.65 | 0.53 | 0.86 | 1.88 | 146393 | 18559 | 35 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JCN | 3285 | 2023-08-30 | 2016-01-04 | 4.6 | 4.58 | — | 4.4 | 0.007 | 1.08 | 9.0 | 0.10 | 12.71 | 0.01 | 1.344 | 3.04 | 0.18 | 6.9 | 91.6 | 1.5 | -3.44 | 0.75 | 0.65 | — | 4.4 | 0.005 | 0.77 | 0.0 | 0.04 | 15.59 | 0.01 | 1.963 | 30.05 | 0.06 | 11.2 | 88.3 | 0.5 | -2.53 | 1.05 | 0.81 | 0.79 | — | 147292 | 6123 | 57 | 4638 | 1 | 0 | 0 | logfile |