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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VN0 | 21246 | 2023-08-16 | 2020-01-29 | 4.25 | 4.57 | 4.28 | 4.5 | 0.018 | 1.76 | 0.0 | 0.10 | 10.80 | 0.01 | 2.270 | 1.83 | 0.15 | 2.9 | 96.5 | 0.6 | 0.70 | 0.74 | 0.78 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.05 | 13.05 | 0.00 | 2.086 | 11.53 | 0.10 | 6.0 | 93.6 | 0.4 | -0.52 | 1.83 | 0.73 | 0.80 | — | 19962 | 2364 | 51 | 0 | 105 | 0 | 0 | logfile |
✔ | 7QTJ | 14142 | 2023-08-11 | 2022-01-14 | 4.01 | 4.23 | — | 4.1 | 0.004 | 0.73 | 4.0 | 0.05 | 13.80 | 0.01 | 2.144 | 8.44 | 1.27 | 5.2 | 94.5 | 0.3 | 0.17 | 0.63 | 0.74 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 13.18 | 0.00 | 2.073 | 11.25 | 0.00 | 5.7 | 94.1 | 0.2 | -0.53 | 0.46 | 0.64 | 0.75 | — | 9942 | 1280 | 8 | 0 | 5 | 0 | 0 | logfile |
✔ | 7JPR | 22420 | 2023-08-14 | 2020-08-09 | 4.0 | 4.90 | — | 3.3 | 0.006 | 1.20 | 0.0 | 0.06 | 15.00 | 0.01 | 2.048 | 5.49 | 0.00 | 3.6 | 96.4 | 0.0 | -2.74 | 0.82 | 0.68 | — | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.52 | 0.00 | 1.860 | 20.82 | 0.48 | 4.4 | 95.6 | 0.0 | 0.11 | 1.45 | 0.86 | 0.77 | — | 16737 | 2045 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2023-08-14 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 15.73 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.08 | 0.00 | 1.930 | 17.12 | 0.00 | 9.3 | 90.7 | 0.0 | -1.32 | 1.43 | 0.59 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✘ | 7RH5 | 24455 | 2023-08-23 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93342 | 6072 | 44 | 0 | 66 | 0 | 44380 | logfile |
✔ | 7JPS | 22421 | 2023-08-14 | 2020-08-09 | 4.4 | 5.22 | — | 3.8 | 0.006 | 1.19 | 1.0 | 0.06 | 16.52 | 0.01 | 2.102 | 4.24 | 0.00 | 3.1 | 96.9 | 0.0 | -2.45 | 0.67 | 0.46 | — | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.15 | 0.00 | 1.932 | 14.17 | 0.00 | 3.7 | 96.3 | 0.0 | 0.10 | 1.53 | 0.83 | 0.71 | — | 16352 | 1932 | 11 | 26 | 7 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2023-08-26 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.61 | 0.0 | 0.10 | 11.52 | 0.01 | 0.718 | 10.44 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.003 | 0.66 | 0.0 | 0.04 | 11.44 | 0.00 | 1.871 | 46.76 | 0.46 | 6.5 | 93.5 | 0.0 | 0.42 | 0.95 | 0.81 | 0.66 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✔ | 7LYP | 23598 | 2023-08-17 | 2021-03-07 | 4.05 | 4.38 | — | 4.1 | 0.013 | 1.73 | 0.0 | 0.09 | 13.10 | 0.01 | 2.509 | 0.28 | 0.71 | 6.7 | 92.7 | 0.6 | -1.22 | 0.82 | 0.81 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 12.67 | 0.00 | 2.106 | 8.20 | 0.00 | 4.4 | 95.6 | 0.0 | 0.32 | 1.27 | 0.82 | 0.81 | — | 23504 | 2985 | 6 | 0 | 28 | 0 | 0 | logfile |
✔ | 7AQo | 11871 | 2023-08-25 | 2020-10-22 | 4.5 | 4.75 | — | 3.9 | 0.008 | 1.02 | 16.0 | 0.07 | 16.27 | 0.01 | 1.547 | 11.13 | 10.45 | 6.2 | 93.6 | 0.2 | -1.71 | 0.71 | 0.48 | — | 3.9 | 0.009 | 0.73 | 0.0 | 0.04 | 12.43 | 0.00 | 1.998 | 12.34 | 0.00 | 5.6 | 94.4 | 0.0 | 0.90 | 1.00 | 0.76 | 0.62 | — | 40261 | 5611 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ToZ | 26042 | 2023-08-18 | 2022-01-24 | 4.07 | 4.80 | — | 4.0 | 0.014 | 1.84 | 11.0 | 0.10 | 15.16 | 0.02 | 2.509 | 0.68 | 2.87 | 8.7 | 90.4 | 0.8 | -1.96 | 0.85 | 0.79 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 13.43 | 0.00 | 2.095 | 13.67 | 0.00 | 7.1 | 92.8 | 0.1 | -0.56 | 0.58 | 0.85 | 0.80 | — | 24470 | 3026 | 20 | 0 | 60 | 0 | 0 | logfile |
✘ | 7RWA | 24712 | 2023-08-14 | 2021-08-19 | 4.7 | 5.66 | 4.89 | 4.6 | 0.003 | 0.89 | 0.0 | 0.05 | 5.84 | 0.00 | 1.914 | 2.65 | 0.00 | 5.8 | 93.7 | 0.5 | -0.12 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16158 | 3244 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X26 | 21996 | 2023-08-23 | 2020-05-20 | 4.1 | 4.33 | — | 4.1 | 0.008 | 1.12 | 1.0 | 0.06 | 17.17 | 0.01 | 1.983 | 12.55 | 0.11 | 7.7 | 92.2 | 0.1 | -2.68 | 0.79 | 0.78 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 1.872 | 18.28 | 0.03 | 6.7 | 93.2 | 0.0 | -1.14 | 0.45 | 0.79 | 0.77 | — | 35870 | 4314 | 10 | 113 | 3 | 0 | 0 | logfile |
✔ | 6X2F | 22006 | 2023-08-23 | 2020-05-20 | 4.0 | 4.17 | — | 4.0 | 0.008 | 1.20 | 0.0 | 0.06 | 16.78 | 0.01 | 2.054 | 12.29 | 0.25 | 7.8 | 91.9 | 0.4 | -2.72 | 0.75 | 0.73 | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.04 | 18.21 | 0.00 | 1.976 | 20.09 | 0.36 | 6.9 | 93.1 | 0.0 | -1.36 | 1.40 | 0.75 | 0.74 | — | 36054 | 4316 | 11 | 113 | 4 | 0 | 0 | logfile |
✔ | 6T7S | 10371 | 2023-08-17 | 2019-10-23 | 4.5 | 4.67 | — | 4.5 | 0.004 | 0.93 | 0.0 | 0.06 | 14.16 | 0.01 | 2.278 | 7.26 | 0.28 | 6.0 | 94.0 | 0.0 | -4.74 | 0.65 | 0.77 | — | 4.5 | 0.003 | 0.81 | 0.0 | 0.04 | 13.18 | 0.00 | 2.047 | 16.04 | 0.00 | 6.0 | 93.9 | 0.1 | -1.26 | 3.57 | 0.66 | 0.74 | — | 23436 | 3090 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2023-08-17 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.9 | 0.003 | 0.74 | 0.0 | 0.04 | 13.07 | 0.00 | 2.157 | 15.69 | 0.00 | 9.7 | 90.2 | 0.1 | -1.41 | 3.45 | 0.74 | 0.50 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i84 | 4429 | 2023-08-25 | 2018-11-19 | 4.4 | 8.42 | 4.46 | 3.4 | 0.008 | 1.11 | 0.0 | 0.06 | 21.96 | 0.01 | 2.063 | 11.17 | 0.79 | 11.8 | 88.2 | 0.1 | -4.33 | 0.79 | 0.57 | — | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 20.90 | 0.00 | 1.931 | 20.41 | 0.02 | 8.4 | 91.6 | 0.0 | -1.03 | 0.68 | 0.92 | 0.69 | — | 43988 | 4665 | 29 | 337 | 9 | 0 | 0 | logfile |
✔ | 3JAP | 3048 | 2023-08-24 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.48 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | 4.9 | 0.004 | 0.77 | 0.0 | 0.04 | 18.91 | 0.01 | 1.237 | 23.76 | 0.03 | 10.5 | 88.7 | 0.8 | -1.59 | 2.18 | 0.71 | 0.80 | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✔ | 7SK5 | 25173 | 2023-08-13 | 2021-10-19 | 4.0 | 4.30 | — | 4.2 | 0.004 | 0.63 | 0.0 | 0.06 | 13.93 | 0.00 | 1.998 | 6.42 | 0.00 | 4.7 | 95.3 | 0.0 | 0.50 | 0.69 | 0.81 | — | 4.2 | 0.002 | 0.54 | 0.0 | 0.04 | 15.66 | 0.00 | 1.979 | 10.91 | 0.63 | 4.9 | 95.1 | 0.0 | -0.06 | 0.47 | 0.69 | 0.80 | — | 14160 | 897 | 7 | 0 | 7 | 0 | 6928 | logfile |
✔ | 6BX3 | 7303 | 2023-08-11 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.11 | 0.00 | 2.070 | 24.58 | 0.00 | 17.2 | 82.7 | 0.1 | -3.48 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z4E | 14494 | 2023-08-15 | 2022-03-03 | 4.14 | 5.32 | 4.15 | 4.2 | 0.004 | 0.55 | 0.0 | 0.04 | 15.77 | 0.00 | 2.196 | 9.63 | 1.64 | 2.0 | 98.0 | 0.0 | 0.67 | 0.88 | 0.76 | — | 4.3 | 0.004 | 0.61 | 0.0 | 0.04 | 16.22 | 0.00 | 2.159 | 18.25 | 0.00 | 3.5 | 96.5 | 0.0 | 0.86 | 3.44 | 0.90 | 0.81 | — | 14069 | 1357 | 4 | 142 | 0 | 0 | 0 | logfile |