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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HV9 | 0288 | 2023-08-26 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.25 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.30 | 0.00 | 2.086 | 16.13 | 0.02 | 8.1 | 91.8 | 0.1 | -1.67 | 1.65 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✔ | 7V02 | 26927 | 2023-08-15 | 2022-05-09 | 4.97 | 8.16 | 5.87 | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 13.46 | 0.00 | 2.048 | 13.24 | 0.65 | 4.8 | 95.1 | 0.0 | -1.12 | 0.83 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 2.143 | 22.35 | 0.00 | 4.0 | 96.0 | 0.0 | -0.14 | 1.11 | 0.91 | 0.81 | — | 17417 | 2070 | 9 | 29 | 0 | 0 | 0 | logfile |
✔ | 8ET2 | 28584 | 2023-08-25 | 2022-10-15 | 4.96 | 5.56 | 5.14 | 5.6 | 0.004 | 1.00 | 0.0 | 0.05 | 13.70 | 0.01 | 1.879 | 23.18 | 0.00 | 11.7 | 88.3 | 0.0 | -4.06 | 0.69 | 0.49 | — | 5.5 | 0.003 | 0.71 | 0.0 | 0.05 | 13.57 | 0.00 | 1.760 | 17.17 | 0.00 | 8.9 | 91.1 | 0.0 | -3.48 | 0.62 | 0.68 | 0.48 | — | 43584 | 5304 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-08-20 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2023-08-25 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2023-08-09 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PD4 | 13330 | 2023-08-10 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.003 | 0.78 | 0.0 | 0.04 | 13.56 | 0.00 | 2.126 | 18.85 | 0.00 | 5.8 | 94.2 | 0.0 | -0.39 | 1.28 | 0.73 | 0.73 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ZCS | 6913 | 2023-08-27 | 2018-02-20 | 4.9 | 5.50 | — | 6.9 | 0.003 | 0.77 | 0.0 | 0.05 | 9.66 | 0.01 | 2.281 | 3.31 | 0.05 | 5.6 | 94.3 | 0.1 | -5.28 | 0.85 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49176 | 6644 | 8 | 0 | 278 | 0 | 0 | logfile |
✔ | 5LJo | 4061 | 2023-08-18 | 2016-07-19 | 4.9 | 7.28 | — | 5.9 | 0.014 | 1.69 | 1.0 | 0.08 | 11.01 | 0.01 | 2.147 | 5.45 | 0.15 | 9.4 | 86.8 | 3.8 | -2.52 | 0.69 | 0.58 | — | 5.9 | 0.003 | 0.70 | 0.0 | 0.04 | 12.76 | 0.00 | 1.923 | 18.84 | 0.00 | 12.3 | 87.3 | 0.4 | -2.48 | 1.32 | 0.80 | 0.80 | — | 24947 | 1624 | 5 | 0 | 0 | 0 | 12255 | logfile |
✔ | 8A5Y | 15199 | 2023-08-10 | 2022-06-16 | 4.9 | 5.07 | 4.78 | 4.9 | 0.004 | 0.88 | 4.0 | 0.05 | 13.25 | 0.00 | 1.998 | 18.51 | 0.05 | 3.9 | 95.8 | 0.4 | 0.86 | 0.85 | 0.76 | — | 4.9 | 0.004 | 0.72 | 0.0 | 0.04 | 13.57 | 0.00 | 2.062 | 18.06 | 0.02 | 4.7 | 95.1 | 0.2 | 0.46 | 0.68 | 0.86 | 0.78 | — | 57866 | 7213 | 18 | 0 | 3 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-08-09 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2023-08-09 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.91 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.6 | 0.004 | 0.69 | 0.0 | 0.04 | 4.96 | 0.00 | 2.132 | 7.42 | 0.00 | 8.6 | 91.4 | 0.0 | -0.31 | 2.71 | 0.73 | 0.69 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2023-08-10 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.96 | 0.00 | 2.003 | 41.39 | 4.76 | 14.3 | 85.7 | 0.0 | -7.09 | 12.61 | 0.65 | 0.22 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 8EXQ | 28659 | 2023-08-11 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 6.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.89 | 0.00 | 2.068 | 17.98 | 0.00 | 5.3 | 94.5 | 0.2 | -0.50 | 2.54 | 0.58 | 0.63 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5VoT | 8721 | 2023-08-14 | 2017-05-03 | 4.9 | 4.98 | — | 4.9 | 0.004 | 0.67 | 0.0 | 0.04 | 7.57 | 0.00 | 2.126 | 11.91 | 0.00 | 8.5 | 91.5 | 0.0 | -4.03 | 0.63 | 0.71 | — | 4.9 | 0.003 | 0.69 | 0.0 | 0.04 | 11.01 | 0.00 | 2.137 | 14.03 | 0.00 | 6.3 | 93.7 | 0.0 | 0.08 | 0.85 | 0.65 | 0.80 | — | 16463 | 2322 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P2P | 13171 | 2023-08-09 | 2021-07-06 | 4.9 | 4.40 | 5.09 | 4.3 | 0.005 | 1.10 | 0.0 | 0.07 | 11.29 | 0.01 | 2.325 | 4.27 | 0.19 | 8.1 | 91.9 | 0.0 | -3.94 | 0.76 | 0.66 | — | 4.2 | 0.003 | 0.85 | 0.0 | 0.05 | 12.62 | 0.00 | 2.178 | 17.91 | 0.19 | 6.9 | 93.1 | 0.0 | -2.04 | 1.15 | 0.78 | 0.72 | — | 4783 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 5LMX | 4088 | 2023-08-21 | 2016-08-02 | 4.9 | 5.64 | — | 4.9 | 0.011 | 1.55 | 0.0 | 0.06 | 18.69 | 0.01 | 0.614 | 16.48 | 8.43 | 6.5 | 92.9 | 0.6 | -2.70 | 0.80 | 0.62 | — | 4.9 | 0.003 | 0.71 | 0.0 | 0.04 | 14.49 | 0.00 | 2.014 | 17.77 | 0.00 | 4.5 | 95.4 | 0.0 | -0.20 | 2.23 | 0.88 | 0.79 | — | 31118 | 3918 | 19 | 0 | 6 | 0 | 0 | logfile |
✔ | 3J6F | 5896 | 2023-08-11 | 2014-02-19 | 4.9 | 4.97 | — | 4.9 | 0.021 | 2.64 | 64.0 | 0.14 | 14.01 | 0.01 | 2.069 | 5.57 | 0.14 | 3.1 | 96.3 | 0.6 | -1.05 | 0.62 | 0.66 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.05 | 14.43 | 0.01 | 1.807 | 20.81 | 0.06 | 2.9 | 97.1 | 0.0 | 0.36 | 2.79 | 0.68 | 0.81 | — | 60903 | 7686 | 45 | 9 | 18 | 36 | 0 | logfile |
✔ | 7BWA | 30231 | 2023-08-12 | 2020-04-14 | 4.9 | 5.10 | 4.70 | 4.8 | 0.004 | 0.77 | 0.0 | 0.05 | 15.31 | 0.00 | 1.970 | 41.05 | 0.00 | 13.4 | 86.6 | 0.0 | -4.15 | 0.80 | 0.64 | — | 4.8 | 0.003 | 0.74 | 0.0 | 0.05 | 14.14 | 0.00 | 2.136 | 19.42 | 0.00 | 7.9 | 92.1 | 0.0 | -2.97 | 1.69 | 0.79 | 0.60 | — | 11670 | 1444 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q9i | 13870 | 2023-08-21 | 2021-11-12 | 4.9 | 5.59 | — | 5.3 | 0.004 | 0.57 | 0.0 | 0.04 | 10.89 | 0.00 | 2.216 | 4.73 | 0.80 | 3.4 | 96.5 | 0.0 | -0.34 | 0.76 | 0.63 | — | 5.3 | 0.003 | 0.67 | 0.0 | 0.05 | 11.70 | 0.00 | 2.097 | 17.01 | 0.03 | 3.4 | 96.6 | 0.1 | -0.56 | 1.95 | 0.79 | 0.71 | — | 30966 | 3881 | 24 | 0 | 53 | 0 | 0 | logfile |