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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7U1E | 26299 | 2023-11-17 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 11.18 | 0.00 | 2.240 | 5.36 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.005 | 0.72 | 0.0 | 0.05 | 11.96 | 0.00 | 2.129 | 15.55 | 0.00 | 6.0 | 94.0 | 0.0 | 0.02 | 0.62 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-11-18 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Xo0 | 33332 | 2023-11-13 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.003 | 0.43 | 0.0 | 0.05 | 17.01 | 0.00 | 2.241 | 5.71 | 1.94 | 5.8 | 94.2 | 0.0 | -2.86 | 0.38 | 0.47 | 0.87 | 6.51 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-11-15 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.48 | 0.01 | 1.939 | 74.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.24 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-11-14 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2023-11-13 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 9.12 | 0.00 | 2.270 | 6.46 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 11.57 | 0.00 | 2.195 | 8.61 | 0.00 | 2.1 | 97.9 | 0.0 | 0.79 | 0.56 | 0.89 | 0.85 | 2.25 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 8FEJ | 29029 | 2023-11-15 | 2022-12-06 | 4.64 | 5.33 | 4.68 | 4.6 | 0.001 | 0.37 | 0.0 | 0.04 | 13.97 | 0.00 | 2.253 | 6.27 | 4.30 | 2.9 | 96.9 | 0.2 | 0.48 | 0.88 | 0.69 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 12.24 | 0.00 | 2.204 | 9.64 | 0.00 | 6.1 | 93.7 | 0.2 | -0.44 | 1.31 | 0.91 | 0.74 | — | 10464 | 1368 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C9A | 16507 | 2023-11-17 | 2023-01-21 | 4.86 | 5.39 | 4.92 | 4.8 | 0.001 | 0.45 | 0.0 | 0.04 | 13.85 | 0.00 | 1.924 | 6.58 | 0.23 | 3.6 | 96.4 | 0.0 | 1.73 | 0.82 | 0.76 | — | 4.8 | 0.005 | 0.77 | 0.0 | 0.05 | 17.69 | 0.01 | 2.021 | 36.89 | 0.00 | 6.9 | 93.1 | 0.0 | -1.43 | 1.61 | 0.85 | 0.85 | — | 18059 | 525 | 7 | 650 | 0 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2023-11-13 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.005 | 0.60 | 0.0 | 0.05 | 19.10 | 0.00 | 2.290 | 4.76 | 3.88 | 7.2 | 92.8 | 0.0 | -1.69 | 2.16 | 0.49 | 0.88 | 6.49 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GKA | 40181 | 2023-11-18 | 2023-03-17 | 2.55 | 2.76 | 2.62 | 2.8 | 0.001 | 0.38 | 0.0 | 0.03 | 12.09 | 0.00 | 2.291 | 7.21 | 0.54 | 3.2 | 96.8 | 0.0 | 0.61 | 0.63 | 0.78 | 3.74 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 17.28 | 0.00 | 2.204 | 9.44 | 1.81 | 4.0 | 96.0 | 0.0 | 0.74 | 1.61 | 0.64 | 0.82 | 3.41 | 21812 | 2500 | 8 | 0 | 34 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-11-18 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-11-17 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.006 | 0.93 | 0.0 | 0.04 | 19.63 | 0.01 | 1.935 | 41.01 | 0.91 | 20.6 | 78.2 | 1.3 | -4.93 | 2.35 | 0.80 | 0.66 | 0.49 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-11-14 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2023-11-20 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | 1.80 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-11-13 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.89 | 0.0 | 0.04 | 22.81 | 0.01 | 1.797 | 83.72 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.81 | 0.96 | 0.88 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7JLX | 22383 | 2023-11-13 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoD | 22972 | 2023-11-16 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.49 | 0.0 | 0.04 | 13.86 | 0.00 | 1.860 | 2.84 | 0.22 | 0.6 | 99.4 | 0.0 | 5.19 | 0.83 | 0.87 | 0.93 | 8.00 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 8FEL | 29032 | 2023-11-14 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 12.77 | 0.00 | 2.288 | 10.75 | 0.00 | 3.8 | 96.2 | 0.0 | 0.13 | 1.69 | 0.74 | 0.45 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-11-15 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGG | 11205 | 2023-11-19 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.83 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 11.39 | 0.00 | 2.111 | 11.42 | 0.36 | 5.9 | 94.0 | 0.0 | -0.97 | 1.78 | 0.87 | 0.83 | 1.19 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |