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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SQV | 25396 | 2023-11-13 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.30 | 0.00 | 2.295 | 1.36 | 1.67 | 1.1 | 98.9 | 0.0 | 1.71 | 1.99 | 0.77 | 0.90 | 3.84 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 7T3N | 25665 | 2023-11-13 | 2021-12-08 | 3.0 | 3.31 | — | 3.3 | 0.009 | 0.73 | 0.0 | 0.05 | 16.24 | 0.01 | 2.131 | 5.13 | 0.00 | 4.7 | 95.3 | 0.0 | -3.24 | 0.51 | 0.85 | 3.81 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 15.47 | 0.01 | 2.280 | 7.19 | 0.87 | 2.9 | 97.1 | 0.0 | -0.06 | 0.39 | 0.49 | 0.85 | 2.69 | 3512 | 452 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RTW | 24691 | 2023-11-13 | 2021-08-15 | 3.23 | 3.74 | — | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 14.68 | 0.00 | 2.213 | 9.12 | 0.00 | 3.9 | 96.1 | 0.0 | 2.01 | 0.60 | 0.70 | 0.84 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 16.75 | 0.00 | 2.275 | 7.80 | 0.34 | 3.6 | 96.4 | 0.0 | 2.62 | 0.36 | 0.60 | 0.72 | 0.97 | 5644 | 701 | 8 | 0 | 17 | 0 | 0 | logfile |
✘ | 7UNC | 26620 | 2023-11-13 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✔ | 7RFP | 24444 | 2023-11-13 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.02 | 0.00 | 2.177 | 9.44 | 0.00 | 14.9 | 84.6 | 0.5 | -3.98 | 1.49 | 0.80 | 0.75 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2023-11-13 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 2.125 | 14.62 | 0.92 | 5.3 | 94.0 | 0.6 | 0.66 | 1.35 | 0.58 | 0.82 | 1.62 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F62 | 31470 | 2023-11-13 | 2021-06-24 | 3.6 | 4.33 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.21 | 0.00 | 1.925 | 19.73 | 1.38 | 8.1 | 91.6 | 0.2 | -2.76 | 0.66 | 0.62 | 0.54 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.29 | 0.00 | 2.210 | 10.02 | 0.28 | 9.3 | 90.7 | 0.0 | -1.80 | 1.81 | 0.69 | 0.77 | 1.53 | 3321 | 427 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E50 | 27899 | 2023-11-13 | 2022-08-19 | 3.67 | 3.33 | 3.68 | 3.7 | 0.040 | 2.29 | 0.0 | 0.09 | 16.13 | 0.00 | 1.603 | 5.17 | 0.00 | 4.4 | 95.6 | 0.0 | -4.32 | 0.50 | 0.67 | 2.44 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 17.05 | 0.00 | 2.190 | 10.05 | 0.17 | 3.0 | 97.0 | 0.0 | 1.05 | 1.68 | 0.66 | 0.83 | 2.11 | 5277 | 651 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8E4Y | 27898 | 2023-11-13 | 2022-08-19 | 3.4 | 3.42 | 3.37 | 3.5 | 0.016 | 1.86 | 0.0 | 0.09 | 15.84 | 0.01 | 2.412 | 0.75 | 0.00 | 3.8 | 96.2 | 0.0 | -2.41 | 0.56 | 0.75 | 2.88 | 3.5 | 0.004 | 0.51 | 0.0 | 0.04 | 16.76 | 0.00 | 2.229 | 3.47 | 0.35 | 3.1 | 96.9 | 0.0 | 1.33 | 1.01 | 0.69 | 0.88 | 2.64 | 5294 | 651 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7B0U | 11971 | 2023-11-13 | 2020-11-22 | 3.86 | 4.15 | — | 4.1 | 0.004 | 0.71 | 4.0 | 0.04 | 12.48 | 0.00 | 2.196 | 16.72 | 0.54 | 5.8 | 94.2 | 0.0 | -0.21 | 0.66 | 0.74 | 0.48 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 14.96 | 0.00 | 2.096 | 18.38 | 0.41 | 6.8 | 93.2 | 0.0 | -0.05 | 0.46 | 0.67 | 0.75 | 0.50 | 105492 | 13320 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YM8 | 33924 | 2023-11-13 | 2022-07-27 | 2.92 | 3.14 | 2.90 | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 15.40 | 0.01 | 2.331 | 4.04 | 0.00 | 4.2 | 95.8 | 0.0 | -3.62 | 0.68 | 0.81 | 3.68 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.52 | 0.00 | 2.231 | 6.05 | 1.40 | 3.9 | 96.1 | 0.0 | 0.23 | 0.47 | 0.66 | 0.82 | 3.11 | 4287 | 556 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XoN | 33353 | 2023-11-13 | 2022-05-01 | 3.1 | 3.66 | 2.94 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 12.44 | 0.00 | 2.325 | 9.45 | 0.00 | 1.5 | 98.5 | 0.0 | 2.61 | 0.57 | 0.88 | 2.21 | 3.3 | 0.005 | 0.58 | 0.0 | 0.04 | 14.07 | 0.00 | 2.288 | 10.09 | 0.50 | 1.3 | 98.7 | 0.0 | 2.41 | 0.41 | 0.59 | 0.91 | 2.35 | 3855 | 524 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B6E | 12053 | 2023-11-13 | 2020-12-07 | 4.5 | 2.79 | — | 5.1 | 0.005 | 1.03 | 0.0 | 0.05 | 15.04 | 0.01 | 2.129 | 36.05 | 0.00 | 10.9 | 89.1 | 0.0 | -3.88 | 0.62 | 0.66 | — | 2.4 | 0.004 | 0.99 | 0.0 | 0.05 | 14.87 | 0.00 | 2.111 | 27.61 | 0.00 | 11.3 | 88.7 | 0.0 | -1.65 | 0.83 | 0.61 | 0.67 | — | 2205 | 269 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C94 | 16501 | 2023-11-13 | 2023-01-21 | 3.8 | 4.29 | 4.13 | 3.8 | 0.002 | 0.41 | 0.0 | 0.03 | 13.06 | 0.00 | 1.610 | 7.44 | 0.00 | 5.3 | 94.7 | 0.0 | 0.23 | 0.79 | 0.79 | 1.17 | 3.9 | 0.006 | 0.71 | 0.0 | 0.04 | 15.40 | 0.00 | 1.973 | 24.31 | 0.60 | 10.1 | 89.7 | 0.1 | -1.71 | 1.42 | 0.81 | 0.84 | 1.30 | 54560 | 2070 | 21 | 1787 | 0 | 0 | 0 | logfile |
✔ | 7YWA | 34151 | 2023-11-13 | 2022-08-22 | 3.26 | 2.85 | 3.14 | 3.1 | 0.006 | 0.87 | 0.0 | 0.05 | 18.79 | 0.00 | 1.718 | 11.41 | 0.85 | 3.0 | 97.0 | 0.0 | 0.53 | 0.37 | 0.69 | 2.31 | 3.0 | 0.005 | 0.63 | 0.0 | 0.05 | 18.78 | 0.00 | 1.917 | 13.56 | 0.17 | 3.5 | 96.5 | 0.0 | 0.37 | 0.61 | 0.45 | 0.75 | 2.53 | 5808 | 744 | 6 | 6 | 4 | 0 | 0 | logfile |
✔ | 7KKL | 22910 | 2023-11-13 | 2020-10-27 | 2.85 | 3.36 | 2.85 | 3.2 | 0.020 | 1.69 | 0.0 | 0.12 | 10.22 | 0.01 | 2.377 | 0.94 | 0.41 | 1.5 | 98.5 | 0.0 | 0.96 | 0.80 | 0.84 | 4.22 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 13.81 | 0.00 | 1.919 | 4.34 | 0.76 | 2.4 | 97.5 | 0.1 | 0.67 | 1.46 | 0.80 | 0.87 | 3.95 | 52461 | 3360 | 27 | 0 | 63 | 0 | 25437 | logfile |
✔ | 8C92 | 16499 | 2023-11-13 | 2023-01-21 | 3.79 | 4.24 | 4.02 | 3.8 | 0.002 | 0.38 | 0.0 | 0.03 | 13.24 | 0.00 | 1.872 | 5.69 | 0.00 | 4.5 | 95.4 | 0.1 | 0.46 | 0.83 | 0.79 | 1.60 | 3.8 | 0.005 | 0.61 | 0.0 | 0.03 | 15.31 | 0.00 | 2.005 | 18.89 | 0.29 | 8.0 | 92.0 | 0.0 | -1.25 | 0.57 | 0.85 | 0.84 | 1.72 | 53489 | 1700 | 17 | 1873 | 0 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2023-11-13 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.276 | 3.37 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 20.61 | 0.00 | 2.136 | 4.91 | 0.20 | 2.3 | 97.7 | 0.0 | -0.25 | 1.32 | 0.79 | 0.86 | 2.87 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 6VRL | 21370 | 2023-11-13 | 2020-02-07 | 3.8 | 3.98 | 4.22 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.21 | 0.00 | 2.159 | 10.65 | 0.00 | 4.9 | 95.1 | 0.0 | -3.12 | 0.49 | 0.69 | 1.43 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 16.14 | 0.00 | 2.161 | 17.62 | 0.46 | 7.0 | 93.0 | 0.0 | -0.93 | 0.75 | 0.50 | 0.69 | 0.85 | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6VRK | 21369 | 2023-11-13 | 2020-02-07 | 4.1 | 4.22 | 4.47 | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 14.22 | 0.00 | 2.245 | 10.73 | 0.00 | 6.5 | 93.5 | 0.0 | -3.10 | 0.47 | 0.69 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 14.28 | 0.00 | 2.142 | 15.49 | 0.15 | 5.8 | 94.2 | 0.0 | -1.18 | 0.83 | 0.47 | 0.68 | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |