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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7FBS | 31519 | 2023-11-14 | 2021-07-12 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9274 | 1118 | 1 | 0 | 17 | 0 | 0 | logfile |
✔ | 8FDG | 29011 | 2023-11-15 | 2022-12-03 | 3.2 | 3.62 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.05 | 14.00 | 0.01 | 2.166 | 10.24 | 0.00 | 11.9 | 88.1 | 0.0 | -2.81 | 0.72 | 0.77 | 2.13 | 3.5 | 0.003 | 0.71 | 0.0 | 0.05 | 15.88 | 0.00 | 2.171 | 10.24 | 0.22 | 12.0 | 87.9 | 0.1 | -2.96 | 0.41 | 0.73 | 0.79 | 2.09 | 12163 | 1505 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GoF | 34177 | 2023-11-13 | 2022-08-24 | 3.0 | 2.97 | 3.06 | 3.1 | 0.006 | 0.80 | 0.0 | 0.05 | 12.71 | 0.01 | 2.269 | 7.05 | 0.00 | 2.5 | 97.5 | 0.0 | -6.52 | 0.44 | 0.81 | 3.59 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 14.49 | 0.00 | 2.219 | 8.85 | 1.14 | 2.5 | 97.5 | 0.0 | 1.11 | 1.48 | 0.44 | 0.82 | 2.90 | 3299 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NVH | 12604 | 2023-11-13 | 2021-03-15 | 3.0 | 3.23 | 3.00 | 3.2 | 0.006 | 0.73 | 0.0 | 0.05 | 14.27 | 0.01 | 2.145 | 7.79 | 0.69 | 5.6 | 94.4 | 0.0 | -0.42 | 0.64 | 0.86 | 2.63 | 3.2 | 0.002 | 0.57 | 0.0 | 0.04 | 15.32 | 0.00 | 2.246 | 7.08 | 0.87 | 4.3 | 95.7 | 0.0 | 0.81 | 0.33 | 0.64 | 0.87 | 2.42 | 5528 | 717 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y14 | 33556 | 2023-11-13 | 2022-06-06 | 3.2 | 3.29 | 3.09 | 3.3 | 0.004 | 0.66 | 1.0 | 0.04 | 13.60 | 0.01 | 2.312 | 8.75 | 0.00 | 4.2 | 95.8 | 0.0 | 2.46 | 0.51 | 0.76 | 2.28 | 3.3 | 0.003 | 0.57 | 1.0 | 0.04 | 15.29 | 0.00 | 2.300 | 9.21 | 0.87 | 4.6 | 95.4 | 0.0 | 3.17 | 1.20 | 0.50 | 0.78 | 2.07 | 2145 | 265 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XQ0 | 33387 | 2023-11-13 | 2022-05-06 | 3.0 | 2.77 | 3.09 | 3.2 | 0.018 | 1.35 | 0.0 | 0.05 | 17.38 | 0.01 | 2.232 | 7.04 | 0.86 | 1.5 | 98.5 | 0.0 | -6.72 | 0.49 | 0.79 | 4.03 | 3.2 | 0.003 | 1.00 | 0.0 | 0.04 | 17.47 | 0.00 | 2.159 | 7.49 | 1.15 | 2.0 | 98.0 | 0.0 | 1.26 | 1.49 | 0.44 | 0.77 | 2.68 | 3320 | 402 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6UY0 | 20945 | 2023-11-14 | 2019-11-09 | 3.23 | 3.39 | — | 3.4 | 0.014 | 1.85 | 0.0 | 0.08 | 13.82 | 0.00 | 1.861 | 1.22 | 0.00 | 4.3 | 95.7 | 0.0 | -2.56 | 0.47 | 0.67 | 1.98 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.95 | 0.00 | 2.001 | 5.51 | 0.19 | 2.1 | 97.9 | 0.0 | 1.50 | 1.14 | 0.64 | 0.83 | 1.36 | 9684 | 1210 | 1 | 0 | 7 | 0 | 0 | logfile |
✔ | 7Y13 | 33555 | 2023-11-13 | 2022-06-06 | 3.1 | 3.20 | 3.10 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 13.19 | 0.01 | 2.195 | 8.24 | 0.00 | 6.1 | 93.9 | 0.0 | 1.88 | 0.59 | 0.80 | 3.01 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.52 | 0.00 | 2.192 | 8.24 | 0.43 | 5.3 | 94.7 | 0.0 | 2.76 | 0.26 | 0.54 | 0.80 | 2.48 | 2199 | 264 | 1 | 0 | 7 | 2 | 0 | logfile |
✔ | 8DWi | 27755 | 2023-11-13 | 2022-08-01 | 3.4 | 4.06 | 3.58 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.02 | 0.01 | 2.258 | 7.44 | 0.00 | 5.0 | 95.0 | 0.0 | 0.29 | 0.28 | 0.33 | -0.40 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.17 | 0.01 | 2.113 | 11.24 | 0.64 | 5.0 | 95.0 | 0.0 | -0.32 | 1.76 | 0.49 | 0.73 | 1.52 | 3192 | 424 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FAS | 31505 | 2023-11-15 | 2021-07-07 | 3.6 | 2.95 | — | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.63 | 0.00 | 2.193 | 9.10 | 0.09 | 4.1 | 95.9 | 0.0 | 0.85 | 0.72 | 0.73 | 0.88 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.25 | 0.00 | 2.192 | 9.70 | 0.18 | 4.1 | 95.9 | 0.0 | 1.07 | 0.43 | 0.73 | 0.75 | 0.97 | 10173 | 1229 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XiZ | 33213 | 2023-11-13 | 2022-04-14 | 3.74 | 3.27 | 3.81 | 3.1 | 0.013 | 1.11 | 0.0 | 0.06 | 17.48 | 0.01 | 2.386 | 4.94 | 0.00 | 12.8 | 86.4 | 0.8 | -3.37 | 0.35 | 0.71 | 1.78 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 17.83 | 0.01 | 2.218 | 16.22 | 1.70 | 16.6 | 82.6 | 0.8 | -3.61 | 1.54 | 0.37 | 0.74 | 1.40 | 2161 | 267 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8GoE | 34176 | 2023-11-13 | 2022-08-24 | 3.0 | 3.01 | 3.02 | 3.1 | 0.006 | 0.76 | 1.0 | 0.05 | 13.25 | 0.01 | 2.273 | 6.40 | 0.57 | 2.0 | 98.0 | 0.0 | -6.19 | 0.46 | 0.82 | 4.16 | 3.1 | 0.003 | 0.62 | 1.0 | 0.04 | 14.40 | 0.00 | 2.173 | 7.58 | 1.42 | 2.5 | 97.5 | 0.0 | 0.91 | 0.42 | 0.46 | 0.84 | 3.01 | 3323 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XQ2 | 33389 | 2023-11-13 | 2022-05-06 | 3.3 | 3.45 | 3.15 | 3.5 | 0.007 | 0.79 | 1.0 | 0.05 | 16.92 | 0.01 | 2.244 | 6.48 | 0.85 | 3.7 | 96.3 | 0.0 | -6.96 | 0.56 | 0.83 | 4.29 | 3.5 | 0.005 | 0.63 | 0.0 | 0.04 | 16.97 | 0.00 | 2.199 | 8.54 | 0.00 | 4.2 | 95.8 | 0.0 | 0.06 | 2.06 | 0.45 | 0.78 | 3.66 | 3377 | 409 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7M5X | 23684 | 2023-11-16 | 2021-03-25 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15476 | 1000 | 1 | 0 | 25 | 11 | 7545 | logfile |
✔ | 5UAR | 8461 | 2023-11-14 | 2016-12-19 | 3.73 | 4.36 | — | 4.4 | 0.008 | 1.18 | 0.0 | 0.06 | 13.30 | 0.00 | 2.393 | 0.26 | 1.06 | 7.4 | 92.5 | 0.1 | -3.58 | 0.58 | 0.77 | 1.39 | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 16.08 | 0.00 | 2.142 | 10.48 | 0.39 | 4.6 | 95.4 | 0.0 | -0.29 | 1.53 | 0.61 | 0.80 | 0.97 | 9489 | 1184 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KZP | 0792 | 2023-11-14 | 2019-09-25 | 3.1 | 2.67 | — | 3.0 | 0.013 | 1.45 | 1.0 | 0.08 | 14.13 | 0.01 | 2.390 | 10.39 | 2.44 | 3.3 | 96.4 | 0.3 | -4.53 | 0.59 | 0.81 | 3.72 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 16.21 | 0.00 | 2.321 | 5.51 | 0.33 | 2.9 | 97.0 | 0.1 | 1.47 | 0.68 | 0.59 | 0.83 | 2.25 | 8557 | 1014 | 1 | 0 | 18 | 0 | 0 | logfile |
✔ | 7XPZ | 33386 | 2023-11-13 | 2022-05-06 | 3.4 | 3.31 | 3.34 | 3.6 | 0.005 | 0.73 | 0.0 | 0.05 | 12.26 | 0.01 | 2.311 | 6.57 | 0.58 | 5.5 | 94.5 | 0.0 | -6.77 | 0.49 | 0.79 | 3.43 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.09 | 0.00 | 2.156 | 8.10 | 0.58 | 5.0 | 95.0 | 0.0 | -0.80 | 1.17 | 0.43 | 0.76 | 2.59 | 3227 | 402 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XQ1 | 33388 | 2023-11-13 | 2022-05-06 | 3.4 | 3.32 | 3.36 | 3.5 | 0.010 | 1.05 | 1.0 | 0.06 | 13.48 | 0.01 | 2.320 | 6.82 | 0.58 | 2.8 | 97.2 | 0.0 | -6.81 | 0.47 | 0.78 | 3.56 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.99 | 0.00 | 2.132 | 8.64 | 0.00 | 3.0 | 97.0 | 0.0 | 0.78 | 1.19 | 0.52 | 0.82 | 1.86 | 3302 | 400 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7B52 | 12017 | 2023-11-15 | 2020-12-03 | 3.8 | 4.98 | — | 3.9 | 0.004 | 0.84 | 0.0 | 0.04 | 14.20 | 0.00 | 2.035 | 24.47 | 0.07 | 16.4 | 83.4 | 0.2 | -2.23 | 0.83 | 0.84 | 0.97 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.17 | 0.00 | 2.105 | 18.54 | 0.21 | 13.6 | 86.3 | 0.1 | -1.29 | 0.92 | 0.83 | 0.83 | 0.73 | 13186 | 1638 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oiM | 12932 | 2023-11-21 | 2021-05-11 | 4.0 | 4.68 | 3.92 | 3.7 | 0.006 | 1.32 | 7.0 | 0.07 | 13.98 | 0.01 | 2.069 | 5.16 | 0.05 | 8.1 | 91.7 | 0.2 | -3.63 | 0.81 | 0.66 | — | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 15.27 | 0.00 | 2.083 | 13.43 | 0.33 | 7.2 | 92.8 | 0.0 | -0.40 | 0.67 | 0.90 | 0.81 | — | 35597 | 4426 | 1 | 0 | 6 | 0 | 0 | logfile |