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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B3A | 15824 | 2023-11-13 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.078 | 6.51 | 29.0 | 0.43 | 19.99 | 0.05 | 1.652 | 313.51 | 3.81 | 47.3 | 8.0 | 44.7 | -10.72 | 2.68 | 0.43 | 0.58 | 2.94 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2023-11-13 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.018 | 1.82 | 0.0 | 0.06 | 18.29 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.56 | 11.0 | 0.23 | 30.56 | 0.02 | 1.630 | 55.02 | 2.47 | 64.9 | 32.1 | 3.0 | -10.63 | 0.67 | 0.73 | 0.90 | 3.19 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-11-13 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2023-11-13 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2023-11-18 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.09 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.99 | 124.0 | 0.27 | 21.79 | 0.03 | 1.600 | 112.56 | 5.62 | 43.9 | 49.5 | 6.5 | -8.57 | 2.58 | 0.80 | 0.86 | 2.01 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-11-15 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2023-11-15 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-11-21 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.68 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.95 | 51.0 | 0.11 | 17.89 | 0.02 | 1.488 | 187.53 | 3.85 | 53.1 | 44.5 | 2.4 | -7.96 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2023-11-14 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.048 | 3.15 | 43.0 | 0.12 | 19.35 | 0.02 | 1.814 | 99.41 | 4.32 | 39.9 | 58.2 | 1.9 | -7.71 | 2.86 | 0.73 | 0.81 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2023-11-13 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.191 | 6.68 | 64.0 | 0.43 | 28.26 | 0.04 | 1.558 | 166.46 | 10.71 | 46.7 | 40.0 | 13.3 | -7.58 | 2.35 | 0.64 | 0.88 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-11-15 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2023-11-15 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.80 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.80 | 0.02 | 1.195 | 109.81 | 0.00 | 43.4 | 55.0 | 1.6 | -7.43 | 1.92 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 6oDY | 20024 | 2023-11-19 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.28 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.05 | 5.0 | 0.14 | 20.12 | 0.02 | 1.721 | 102.91 | 3.91 | 37.7 | 61.0 | 1.3 | -7.26 | 1.53 | 0.69 | 0.69 | 1.79 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2023-11-14 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.96 | 0.00 | 2.003 | 41.39 | 4.76 | 14.3 | 85.7 | 0.0 | -7.09 | 12.61 | 0.65 | 0.22 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 7LQi | 23487 | 2023-11-14 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2023-11-14 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.35 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.98 | 178.0 | 0.19 | 19.49 | 0.02 | 0.810 | 51.66 | 2.96 | 27.0 | 70.3 | 2.8 | -6.90 | 1.64 | 0.75 | 0.86 | 2.31 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 7M65 | 23689 | 2023-11-13 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.050 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.004 | 0.87 | 0.0 | 0.05 | 11.68 | 0.00 | 2.156 | 22.17 | 0.00 | 16.1 | 83.9 | 0.0 | -6.30 | 4.44 | 0.51 | 0.72 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6ZRQ | 11382 | 2023-11-13 | 2020-07-14 | 3.9 | 4.06 | — | 4.2 | 0.014 | 1.45 | 0.0 | 0.05 | 14.33 | 0.00 | 2.597 | 20.13 | 0.00 | 5.0 | 95.0 | 0.0 | -4.20 | 0.64 | 0.62 | 3.62 | 4.2 | 0.003 | 0.75 | 0.0 | 0.05 | 13.63 | 0.00 | 2.125 | 21.92 | 0.93 | 20.8 | 79.2 | 0.0 | -6.09 | 2.13 | 0.70 | 0.77 | 2.54 | 3816 | 276 | 12 | 0 | 0 | 0 | 1776 | logfile |
✔ | 6ZYD | 11557 | 2023-11-21 | 2020-07-31 | 3.0 | 3.62 | 2.76 | 3.4 | 0.017 | 1.20 | 0.0 | 0.12 | 17.41 | 0.01 | 2.269 | 4.88 | 0.00 | 5.1 | 94.9 | 0.0 | -3.12 | 0.75 | 0.77 | 4.36 | 3.4 | 0.059 | 2.56 | 0.0 | 0.17 | 18.86 | 0.02 | 1.731 | 57.41 | 12.94 | 21.7 | 78.3 | 0.0 | -6.09 | 1.47 | 0.79 | 0.86 | 3.23 | 31423 | 1792 | 14 | 0 | 476 | 0 | 14490 | logfile |
✔ | 7DWV | 30887 | 2023-11-13 | 2021-01-18 | 3.07 | 2.95 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.06 | 14.69 | 0.00 | 2.258 | 16.67 | 0.00 | 26.8 | 73.2 | 0.0 | -7.45 | 0.41 | 0.75 | 4.09 | 4.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.18 | 0.00 | 2.182 | 17.15 | 1.19 | 22.4 | 77.6 | 0.0 | -6.08 | 1.50 | 0.41 | 0.75 | 2.54 | 2064 | 258 | 6 | 0 | 0 | 0 | 0 | logfile |