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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7ZNK | 14804 | 2023-11-20 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.83 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |
✘ | 6W1J | 21511 | 2023-11-16 | 2020-03-04 | 2.92 | 3.34 | 2.83 | 3.2 | 0.010 | 1.17 | 0.0 | 0.10 | 10.28 | 0.01 | 2.337 | 2.46 | 0.82 | 5.6 | 94.4 | 0.0 | -5.20 | 0.76 | 0.88 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16861 | 1965 | 25 | 0 | 41 | 0 | 0 | logfile |
✘ | 7WoB | 32647 | 2023-11-21 | 2022-01-21 | 3.25 | 2.88 | — | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 9.20 | 0.00 | 2.243 | 7.02 | 4.57 | 5.0 | 95.0 | 0.0 | -3.68 | 0.85 | 0.77 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35134 | 4476 | 12 | 0 | 38 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2023-11-15 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 7DGR | 30674 | 2023-11-13 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 8B41 | 15836 | 2023-11-20 | 2022-09-19 | 3.8 | 3.07 | 3.30 | 3.7 | 0.002 | 0.48 | 0.0 | 0.04 | 11.83 | 0.00 | 2.169 | 9.52 | 4.69 | 3.6 | 96.4 | 0.0 | -0.49 | 0.78 | 0.77 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31259 | 3805 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-11-18 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-11-18 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2023-11-15 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.44 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6PV8 | 20488 | 2023-11-17 | 2019-07-19 | 3.87 | 4.04 | 3.94 | 4.0 | 0.006 | 1.07 | 1.0 | 0.07 | 9.81 | 0.01 | 2.057 | 5.07 | 0.69 | 4.9 | 95.1 | 0.0 | -2.83 | 0.70 | 0.79 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20051 | 2379 | 28 | 0 | 57 | 8 | 0 | logfile |
✘ | 6K7M | 9941 | 2023-11-15 | 2019-06-07 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10591 | 1307 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 5YKE | 6831 | 2023-11-20 | 2017-10-14 | 4.11 | 4.22 | 3.92 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 13.28 | 0.01 | 2.246 | 11.57 | 7.60 | 3.7 | 95.9 | 0.4 | -1.76 | 0.66 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30636 | 3912 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6RKU | 4910 | 2023-11-16 | 2019-04-30 | 4.0 | 4.41 | — | 4.1 | 0.018 | 1.76 | 0.0 | 0.15 | 14.14 | 0.01 | 2.215 | 5.93 | 0.00 | 7.7 | 92.3 | 0.0 | -2.01 | 0.89 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15526 | 1784 | 9 | 64 | 1 | 0 | 0 | logfile |
✘ | 5XNN | 6743 | 2023-11-14 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 7MW6 | 24064 | 2023-11-21 | 2021-05-15 | 3.22 | 2.55 | — | 1.7 | 0.005 | 0.84 | 1.0 | 0.09 | 12.90 | 0.01 | 1.556 | 11.05 | 0.13 | 5.1 | 94.2 | 0.7 | -1.15 | 0.80 | 0.77 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35247 | 4446 | 45 | 0 | 87 | 0 | 0 | logfile |
✘ | 7Wo4 | 32638 | 2023-11-18 | 2022-01-20 | 4.47 | 3.18 | — | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 8.44 | 0.00 | 2.234 | 5.78 | 3.89 | 6.1 | 93.9 | 0.0 | -3.76 | 0.83 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71208 | 9096 | 24 | 0 | 90 | 0 | 0 | logfile |
✘ | 7RKM | 24500 | 2023-11-14 | 2021-07-22 | 3.5 | 3.62 | — | 3.5 | 0.005 | 0.97 | 0.0 | 0.06 | 12.31 | 0.00 | 2.181 | 7.47 | 0.00 | 3.7 | 96.3 | 0.0 | -1.13 | 0.74 | 0.83 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9491 | 1201 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2023-11-19 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.33 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✘ | 7XX2 | 33498 | 2023-11-22 | 2022-05-28 | 3.6 | 3.49 | 3.64 | 3.3 | 0.006 | 0.95 | 4.0 | 0.06 | 13.96 | 0.01 | 2.033 | 16.70 | 1.27 | 9.9 | 90.0 | 0.0 | -1.28 | 0.86 | 0.82 | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36436 | 4528 | 11 | 0 | 5 | 0 | 0 | logfile |
✘ | 7B1G | 11985 | 2023-11-18 | 2020-11-24 | 3.6 | 3.70 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.05 | 15.84 | 0.00 | 2.213 | 12.50 | 0.09 | 7.4 | 92.6 | 0.0 | -2.22 | 0.79 | 0.85 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21661 | 2689 | 9 | 0 | 8 | 0 | 0 | logfile |