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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K19 | 22622 | 2023-11-20 | 2020-09-07 | 4.3 | 4.44 | — | 4.3 | 0.006 | 1.10 | 1.0 | 0.06 | 17.53 | 0.01 | 2.038 | 8.47 | 0.65 | 12.7 | 87.0 | 0.3 | -4.91 | 0.79 | 0.77 | — | 4.3 | 0.004 | 0.76 | 0.0 | 0.04 | 16.24 | 0.00 | 2.109 | 15.32 | 0.00 | 12.1 | 87.9 | 0.0 | -1.76 | 0.61 | 0.79 | 0.77 | — | 29158 | 3569 | 4 | 48 | 0 | 0 | 0 | logfile |
✔ | 8ABH | 15321 | 2023-11-21 | 2022-07-04 | 3.0 | 3.35 | 2.86 | 3.0 | 0.012 | 1.86 | 55.0 | 0.12 | 18.19 | 0.01 | 2.040 | 4.45 | 4.03 | 2.6 | 97.4 | 0.1 | -1.61 | 0.81 | 0.90 | 3.06 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.04 | 0.00 | 2.118 | 9.00 | 1.29 | 1.8 | 98.2 | 0.0 | 1.62 | 1.66 | 0.80 | 0.91 | 3.30 | 32548 | 3999 | 33 | 0 | 31 | 0 | 0 | logfile |
✔ | 6MRD | 9196 | 2023-11-21 | 2018-10-12 | 3.82 | 4.44 | — | 3.9 | 0.008 | 0.88 | 0.0 | 0.07 | 10.50 | 0.00 | 1.941 | 43.72 | 0.00 | 9.7 | 90.1 | 0.2 | -2.91 | 0.90 | 0.86 | 1.24 | 3.9 | 0.002 | 0.60 | 1.0 | 0.07 | 11.43 | 0.00 | 1.796 | 55.35 | 0.06 | 7.6 | 92.4 | 0.0 | 0.72 | 0.54 | 0.90 | 0.86 | 1.08 | 34517 | 4396 | 21 | 0 | 14 | 0 | 1477 | logfile |
✔ | 7K0N | 22604 | 2023-11-17 | 2020-09-04 | 3.1 | 3.55 | — | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 13.94 | 0.00 | 2.227 | 6.22 | 0.32 | 2.5 | 97.5 | 0.0 | 0.72 | 0.73 | 0.82 | 2.88 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 15.30 | 0.00 | 2.253 | 5.17 | 0.05 | 2.0 | 98.0 | 0.0 | 1.15 | 1.06 | 0.72 | 0.84 | 2.63 | 18470 | 2340 | 14 | 0 | 18 | 0 | 0 | logfile |
✔ | 6V22 | 21025 | 2023-11-22 | 2019-11-22 | 3.2 | 3.50 | — | 3.4 | 0.014 | 1.41 | 0.0 | 0.06 | 17.77 | 0.02 | 2.257 | 5.84 | 0.21 | 4.3 | 95.7 | 0.0 | -3.73 | 0.73 | 0.86 | 3.42 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 16.13 | 0.00 | 2.127 | 7.99 | 0.15 | 3.9 | 96.1 | 0.0 | 0.48 | 1.56 | 0.73 | 0.87 | 3.25 | 37004 | 4380 | 16 | 0 | 100 | 0 | 0 | logfile |
✔ | 8SBD | 40305 | 2023-11-14 | 2023-04-03 | 3.2 | 3.26 | 4.77 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 12.98 | 0.00 | 2.203 | 18.83 | 5.97 | 6.2 | 93.8 | 0.0 | -4.19 | 0.70 | 0.71 | 2.96 | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 15.43 | 0.00 | 1.888 | 27.68 | 0.56 | 11.5 | 88.5 | 0.0 | -4.15 | 1.07 | 0.72 | 0.74 | 3.13 | 8864 | 584 | 32 | 0 | 0 | 0 | 4280 | logfile |
✔ | 7WEA | 32444 | 2023-11-20 | 2021-12-23 | 3.3 | 3.61 | — | 3.5 | 0.004 | 0.78 | 0.0 | 0.05 | 14.03 | 0.00 | 2.111 | 10.04 | 0.03 | 5.8 | 94.1 | 0.1 | -2.05 | 0.80 | 0.81 | 2.48 | 3.5 | 0.003 | 0.62 | 0.0 | 0.05 | 15.38 | 0.00 | 2.125 | 8.90 | 0.21 | 5.7 | 94.2 | 0.1 | -1.03 | 0.38 | 0.79 | 0.81 | 1.94 | 30413 | 3754 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7ZPL | 14857 | 2023-11-17 | 2022-04-27 | 3.12 | 3.95 | 3.13 | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 14.05 | 0.00 | 2.178 | 5.65 | 0.00 | 2.2 | 97.8 | 0.0 | 0.80 | 0.92 | 0.85 | 2.46 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.28 | 0.00 | 2.144 | 9.22 | 0.19 | 3.0 | 97.0 | 0.0 | 1.02 | 4.21 | 0.93 | 0.89 | 2.34 | 19919 | 2422 | 9 | 24 | 1 | 0 | 0 | logfile |
✔ | 6TED | 10480 | 2023-11-14 | 2019-11-11 | 3.1 | 3.20 | 3.00 | 3.1 | 0.025 | 1.40 | 2.0 | 0.08 | 16.30 | 0.01 | 1.961 | 19.36 | 2.09 | 7.9 | 91.5 | 0.6 | -4.77 | 0.68 | 0.72 | 2.02 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 17.18 | 0.00 | 2.032 | 10.76 | 0.29 | 5.1 | 94.9 | 0.0 | -1.27 | 0.76 | 0.72 | 0.77 | 1.91 | 57142 | 7357 | 31 | 106 | 10 | 0 | 0 | logfile |
✔ | 6KPJ | 0748 | 2023-11-15 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.94 | 0.0 | 0.06 | 12.22 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | 3.3 | 0.005 | 0.73 | 1.0 | 0.13 | 14.32 | 0.00 | 1.110 | 6.83 | 0.50 | 3.1 | 96.9 | 0.0 | 0.92 | 0.69 | 0.85 | 0.87 | 3.62 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6MRC | 9195 | 2023-11-17 | 2018-10-12 | 3.08 | 3.40 | — | 3.4 | 0.007 | 0.81 | 0.0 | 0.07 | 10.51 | 0.00 | 1.988 | 27.58 | 0.18 | 7.5 | 92.3 | 0.2 | -2.93 | 0.81 | 0.83 | 3.65 | 3.3 | 0.004 | 0.64 | 0.0 | 0.07 | 13.87 | 0.00 | 1.830 | 33.35 | 0.30 | 6.9 | 93.0 | 0.1 | 0.01 | 0.64 | 0.81 | 0.86 | 3.39 | 69132 | 8792 | 56 | 0 | 28 | 98 | 2954 | logfile |
✔ | 8ABJ | 15323 | 2023-11-21 | 2022-07-04 | 3.7 | 3.62 | 3.32 | 3.1 | 0.012 | 1.94 | 76.0 | 0.13 | 18.25 | 0.01 | 1.563 | 3.98 | 4.36 | 2.8 | 97.2 | 0.1 | -1.58 | 0.80 | 0.91 | 3.30 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 16.81 | 0.00 | 2.160 | 7.58 | 0.03 | 1.5 | 98.5 | 0.0 | 1.87 | 1.80 | 0.79 | 0.88 | 2.37 | 32548 | 3999 | 32 | 0 | 31 | 0 | 0 | logfile |
✔ | 6o9Z | 0664 | 2023-11-19 | 2019-03-15 | 3.03 | 3.58 | — | 3.6 | 0.008 | 0.93 | 0.0 | 0.05 | 12.41 | 0.01 | 2.192 | 12.43 | 0.48 | 4.2 | 95.8 | 0.0 | -3.03 | 0.65 | 0.81 | 2.65 | 3.5 | 0.007 | 0.80 | 0.0 | 0.05 | 15.33 | 0.00 | 2.118 | 13.48 | 1.55 | 6.1 | 93.9 | 0.0 | -0.19 | 1.92 | 0.63 | 0.82 | 2.47 | 25788 | 3605 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LKP | 23409 | 2023-11-16 | 2021-02-02 | 3.27 | 3.86 | — | 3.8 | 0.006 | 0.99 | 0.0 | 0.53 | 16.73 | 0.01 | 1.954 | 19.44 | 0.60 | 5.7 | 94.3 | 0.1 | -0.89 | 0.62 | 0.74 | 1.42 | 3.8 | 0.003 | 0.85 | 0.0 | 0.08 | 17.16 | 0.00 | 2.139 | 9.28 | 0.30 | 4.2 | 95.7 | 0.1 | 0.10 | 1.19 | 0.73 | 0.83 | 1.78 | 15789 | 1941 | 4 | 0 | 29 | 0 | 0 | logfile |
✔ | 6VoA | 21259 | 2023-11-19 | 2020-01-30 | 4.0 | 4.24 | — | 4.1 | 0.004 | 0.83 | 8.0 | 0.06 | 14.09 | 0.00 | 1.107 | 13.95 | 1.57 | 8.8 | 90.7 | 0.5 | -3.28 | 0.69 | 0.58 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.05 | 16.12 | 0.00 | 2.130 | 16.65 | 0.81 | 9.6 | 90.4 | 0.1 | -1.55 | 2.65 | 0.77 | 0.70 | — | 26824 | 3958 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U0P | 8479 | 2023-11-17 | 2016-11-26 | 4.4 | 4.99 | — | 4.2 | 0.007 | 1.19 | 1.0 | 0.05 | 8.61 | 0.01 | 1.541 | 18.54 | 0.00 | 8.3 | 88.2 | 3.4 | -2.22 | 0.75 | 0.62 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 11.24 | 0.00 | 2.141 | 21.47 | 0.00 | 9.2 | 90.2 | 0.6 | -0.41 | 1.63 | 0.82 | 0.78 | — | 20268 | 2557 | 16 | 0 | 372 | 0 | 0 | logfile |
✔ | 7P3F | 13179 | 2023-11-14 | 2021-07-07 | 3.31 | 3.46 | 3.33 | 3.4 | 0.009 | 1.32 | 6.0 | 0.08 | 25.23 | 0.01 | 2.242 | 7.35 | 1.59 | 4.3 | 95.7 | 0.0 | -1.22 | 0.74 | 0.80 | 2.05 | 3.4 | 0.003 | 0.51 | 0.0 | 0.03 | 25.17 | 0.00 | 2.219 | 10.67 | 0.00 | 3.4 | 96.6 | 0.0 | 0.30 | 0.66 | 0.74 | 0.83 | 2.77 | 6878 | 588 | 10 | 100 | 12 | 0 | 0 | logfile |
✔ | 7QP7 | 14114 | 2023-11-14 | 2022-01-03 | 3.7 | 3.92 | 3.65 | 3.7 | 0.013 | 1.52 | 79.0 | 0.11 | 17.80 | 0.02 | 1.782 | 11.26 | 9.36 | 4.0 | 95.7 | 0.3 | -0.22 | 0.76 | 0.75 | 1.33 | 3.7 | 0.005 | 0.77 | 0.0 | 0.04 | 17.09 | 0.01 | 2.048 | 15.33 | 0.59 | 5.6 | 94.4 | 0.0 | -0.28 | 1.41 | 0.79 | 0.81 | 1.40 | 108194 | 9632 | 53 | 1815 | 2 | 0 | 0 | logfile |
✔ | 7Z1H | 14446 | 2023-11-16 | 2022-02-24 | 3.12 | 4.01 | — | 3.5 | 0.016 | 0.97 | 2.0 | 0.04 | 12.32 | 0.00 | 1.830 | 20.25 | 0.18 | 10.8 | 88.7 | 0.5 | -1.31 | 0.79 | 0.79 | 1.28 | 3.5 | 0.016 | 0.94 | 2.0 | 0.04 | 14.23 | 0.00 | 1.692 | 20.59 | 0.00 | 11.7 | 87.9 | 0.4 | -1.08 | 0.41 | 0.79 | 0.77 | 1.28 | 15032 | 1848 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AGC | 15420 | 2023-11-17 | 2022-07-19 | 3.1 | 3.40 | 3.13 | 3.3 | 0.009 | 1.06 | 0.0 | 0.06 | 16.26 | 0.01 | 2.139 | 7.10 | 3.53 | 4.8 | 95.1 | 0.1 | -1.13 | 0.77 | 0.89 | 3.83 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.87 | 0.00 | 2.130 | 5.49 | 0.05 | 2.8 | 97.2 | 0.0 | 0.62 | 1.02 | 0.77 | 0.91 | 3.54 | 17764 | 2152 | 20 | 0 | 33 | 0 | 0 | logfile |