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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CWS | 30486 | 2023-11-22 | 2020-08-31 | 3.4 | 3.74 | — | 3.3 | 0.008 | 1.13 | 10.0 | 0.07 | 10.03 | 0.01 | 1.462 | 32.38 | 0.20 | 6.8 | 93.0 | 0.2 | -3.39 | 0.70 | 0.56 | 2.01 | 3.3 | 0.005 | 0.74 | 0.0 | 0.05 | 12.76 | 0.00 | 2.101 | 16.54 | 0.23 | 6.4 | 93.4 | 0.1 | -1.38 | 1.30 | 0.83 | 0.75 | 1.89 | 36389 | 4602 | 33 | 0 | 46 | 0 | 0 | logfile |
✔ | 6UZB | 20955 | 2023-11-22 | 2019-11-14 | 3.2 | 3.41 | — | 3.3 | 0.010 | 0.92 | 2.0 | 0.06 | 15.21 | 0.01 | 2.236 | 7.09 | 0.84 | 6.3 | 93.6 | 0.0 | -3.78 | 0.83 | 0.86 | 3.53 | 3.3 | 0.006 | 0.61 | 0.0 | 0.05 | 15.61 | 0.00 | 2.132 | 8.21 | 0.14 | 5.0 | 95.0 | 0.0 | -1.18 | 0.46 | 0.81 | 0.87 | 2.98 | 36951 | 4654 | 15 | 0 | 14 | 0 | 0 | logfile |
✔ | 7VCV | 31897 | 2023-11-22 | 2021-09-04 | 3.21 | 3.32 | — | 3.2 | 0.012 | 1.08 | 0.0 | 0.06 | 9.72 | 0.01 | 2.097 | 3.88 | 0.00 | 6.2 | 93.8 | 0.0 | -3.61 | 0.75 | 0.81 | 2.50 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 14.12 | 0.00 | 2.069 | 5.45 | 0.08 | 4.9 | 95.1 | 0.0 | 0.13 | 1.25 | 0.73 | 0.82 | 1.69 | 36036 | 4548 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6X4W | 22043 | 2023-11-22 | 2020-05-24 | 3.8 | 4.16 | — | 4.0 | 0.009 | 1.20 | 0.0 | 0.06 | 16.97 | 0.01 | 1.840 | 10.31 | 0.19 | 8.0 | 91.7 | 0.3 | -2.71 | 0.80 | 0.79 | 1.16 | 4.0 | 0.005 | 0.76 | 0.0 | 0.04 | 18.15 | 0.00 | 1.833 | 18.18 | 0.44 | 7.9 | 92.1 | 0.0 | -1.10 | 0.47 | 0.80 | 0.80 | 0.96 | 36021 | 4316 | 11 | 112 | 4 | 0 | 0 | logfile |
✔ | 6X4Y | 22044 | 2023-11-22 | 2020-05-24 | 3.6 | 3.82 | — | 3.7 | 0.006 | 0.96 | 0.0 | 0.06 | 16.62 | 0.01 | 1.919 | 9.59 | 0.28 | 8.1 | 91.6 | 0.3 | -2.60 | 0.77 | 0.82 | 1.64 | 3.7 | 0.004 | 0.66 | 0.0 | 0.04 | 17.85 | 0.00 | 1.931 | 13.42 | 0.55 | 7.5 | 92.4 | 0.1 | -1.25 | 0.39 | 0.77 | 0.83 | 1.27 | 36088 | 4316 | 11 | 113 | 5 | 0 | 0 | logfile |
✔ | 6X43 | 22039 | 2023-11-22 | 2020-05-22 | 3.6 | 3.68 | — | 3.6 | 0.010 | 1.02 | 0.0 | 0.06 | 16.79 | 0.01 | 1.966 | 10.34 | 0.17 | 9.1 | 90.7 | 0.2 | -2.48 | 0.77 | 0.84 | 2.22 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 17.81 | 0.00 | 1.956 | 11.03 | 0.25 | 6.0 | 93.9 | 0.0 | -0.79 | 0.37 | 0.76 | 0.83 | 1.57 | 36055 | 4316 | 11 | 111 | 5 | 0 | 0 | logfile |
✘ | 7SCB | 25032 | 2023-11-22 | 2021-09-27 | 2.5 | 3.49 | 2.56 | 3.0 | 0.007 | 1.51 | 3.0 | 0.08 | 17.27 | 0.02 | 2.465 | 3.44 | 2.69 | 3.6 | 96.2 | 0.2 | -4.74 | 0.88 | 0.84 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37229 | 4743 | 54 | 0 | 25 | 0 | 0 | logfile |
✔ | 6X2N | 22012 | 2023-11-22 | 2020-05-20 | 3.9 | 4.07 | — | 3.9 | 0.009 | 1.21 | 1.0 | 0.07 | 17.28 | 0.01 | 2.024 | 10.33 | 0.28 | 8.2 | 91.6 | 0.3 | -2.89 | 0.76 | 0.77 | 0.56 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 18.25 | 0.00 | 2.007 | 15.35 | 0.30 | 7.0 | 93.0 | 0.0 | -1.11 | 1.89 | 0.76 | 0.77 | 0.40 | 36079 | 4316 | 11 | 113 | 4 | 0 | 0 | logfile |
✘ | 6FYY | 4328 | 2023-11-22 | 2018-03-12 | 3.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104316 | 8066 | 54 | 1886 | 200 | 0 | 0 | logfile |
✔ | 7C2L | 30276 | 2023-11-22 | 2020-05-08 | 3.1 | 3.25 | — | 3.1 | 0.011 | 1.24 | 0.0 | 0.09 | 16.64 | 0.01 | 1.905 | 38.60 | 6.37 | 13.2 | 82.4 | 4.4 | -4.85 | 0.67 | 0.78 | 2.05 | 3.1 | 0.004 | 0.80 | 0.0 | 0.05 | 16.75 | 0.00 | 2.069 | 10.04 | 0.41 | 9.3 | 90.2 | 0.5 | -1.95 | 2.04 | 0.71 | 0.85 | 1.80 | 35988 | 4479 | 41 | 0 | 89 | 0 | 0 | logfile |
✘ | 7S0S | 24792 | 2023-11-22 | 2021-08-31 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.73 | — | — | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100057 | 3946 | 46 | 3236 | 407 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2023-11-22 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 7X08 | 32920 | 2023-11-22 | 2022-02-21 | 2.7 | 2.78 | — | 2.8 | 0.009 | 0.96 | 0.0 | 0.10 | 17.17 | 0.01 | 1.910 | 14.34 | 10.68 | 8.4 | 90.6 | 0.9 | -2.76 | 0.63 | 0.76 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36396 | 4572 | 36 | 0 | 81 | 0 | 0 | logfile |
✔ | 6X50 | 22045 | 2023-11-22 | 2020-05-24 | 3.3 | 3.58 | — | 3.5 | 0.005 | 0.83 | 1.0 | 0.05 | 16.81 | 0.01 | 1.985 | 8.85 | 0.19 | 7.8 | 91.9 | 0.3 | -2.60 | 0.76 | 0.83 | 2.58 | 3.5 | 0.004 | 0.58 | 0.0 | 0.04 | 18.08 | 0.00 | 1.923 | 10.56 | 0.28 | 6.3 | 93.6 | 0.1 | -1.11 | 1.34 | 0.74 | 0.85 | 1.94 | 36077 | 4315 | 11 | 113 | 5 | 0 | 0 | logfile |
✔ | 7UTH | 26770 | 2023-11-22 | 2022-04-26 | 3.9 | 4.02 | — | 4.0 | 0.006 | 0.98 | 1.0 | 0.05 | 18.37 | 0.01 | 2.095 | 4.45 | 0.72 | 5.3 | 94.5 | 0.2 | -0.70 | 0.46 | 0.67 | 0.95 | 4.0 | 0.003 | 0.57 | 1.0 | 0.03 | 18.50 | 0.00 | 2.002 | 11.40 | 0.53 | 4.7 | 95.1 | 0.1 | 0.87 | 1.74 | 0.51 | 0.71 | 0.79 | 36590 | 2242 | 2 | 0 | 0 | 0 | 18572 | logfile |
✘ | 6H68 | 0147 | 2023-11-22 | 2018-07-26 | 4.6 | 4.70 | — | 4.6 | 0.005 | 0.84 | 0.0 | 0.05 | 11.33 | 0.01 | 2.243 | 6.67 | 0.05 | 7.3 | 92.7 | 0.0 | -3.73 | 0.72 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37103 | 4497 | 22 | 67 | 6 | 0 | 0 | logfile |
✔ | 6WJ5 | 21688 | 2023-11-22 | 2020-04-11 | 3.6 | 3.81 | — | 3.8 | 0.012 | 1.84 | 4.0 | 0.10 | 13.33 | 0.01 | 2.369 | 0.28 | 0.05 | 3.8 | 95.7 | 0.5 | -2.50 | 0.51 | 0.70 | 3.53 | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 16.24 | 0.00 | 2.011 | 6.97 | 0.26 | 3.5 | 96.5 | 0.0 | 0.84 | 1.46 | 0.59 | 0.78 | 2.62 | 36320 | 2248 | 8 | 0 | 4 | 0 | 18268 | logfile |
✘ | 6VFH | 21172 | 2023-11-22 | 2020-01-05 | 3.86 | 3.96 | 3.81 | 3.9 | 0.019 | 1.39 | 0.0 | 0.08 | 9.31 | 0.01 | 2.497 | 0.82 | 0.00 | 0.8 | 99.2 | 0.0 | 2.06 | 0.75 | 0.80 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36984 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-11-22 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.02 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✔ | 6X2F | 22006 | 2023-11-22 | 2020-05-20 | 4.0 | 4.17 | — | 4.0 | 0.008 | 1.20 | 0.0 | 0.06 | 16.78 | 0.01 | 2.054 | 12.29 | 0.25 | 7.8 | 91.9 | 0.4 | -2.72 | 0.75 | 0.73 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 18.05 | 0.00 | 1.968 | 20.18 | 0.55 | 7.2 | 92.8 | 0.0 | -1.25 | 1.40 | 0.75 | 0.75 | — | 36054 | 4316 | 11 | 113 | 4 | 0 | 0 | logfile |