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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VQA | 21346 | 2023-12-16 | 2020-02-04 | 3.7 | 4.02 | — | 3.9 | 0.010 | 0.89 | 0.0 | 0.06 | 10.83 | 0.00 | 2.302 | 1.69 | 0.05 | 2.7 | 97.1 | 0.2 | 0.27 | 0.68 | 0.72 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36114 | 4578 | 17 | 0 | 2 | 0 | 0 | logfile |
✔ | 7M17 | 23614 | 2023-12-11 | 2021-03-12 | 3.65 | 3.90 | 3.47 | 3.8 | 0.010 | 1.02 | 0.0 | 0.05 | 15.77 | 0.00 | 2.234 | 3.14 | 0.00 | 4.3 | 95.7 | 0.0 | -1.06 | 0.68 | 0.80 | 1.78 | 3.8 | 0.004 | 0.63 | 0.0 | 0.04 | 15.94 | 0.00 | 2.108 | 8.25 | 0.57 | 4.7 | 95.3 | 0.0 | 0.87 | 1.22 | 0.69 | 0.81 | 1.55 | 16039 | 1878 | 12 | 0 | 19 | 0 | 0 | logfile |
✔ | 8DLi | 27502 | 2023-12-13 | 2022-07-08 | 2.56 | 3.44 | 2.78 | 2.9 | 0.005 | 0.83 | 0.0 | 0.06 | 12.96 | 0.01 | 2.274 | 3.61 | 0.07 | 2.0 | 98.0 | 0.0 | -0.02 | 0.83 | 0.81 | 2.61 | 2.9 | 0.002 | 0.55 | 0.0 | 0.04 | 13.84 | 0.00 | 2.182 | 6.93 | 0.66 | 1.9 | 98.1 | 0.0 | 0.76 | 1.53 | 0.83 | 0.83 | 2.45 | 25154 | 3110 | 24 | 0 | 60 | 0 | 0 | logfile |
✔ | 6U2W | 20627 | 2023-12-11 | 2019-08-20 | 3.63 | 3.62 | 3.94 | 3.9 | 0.005 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 2.317 | 3.58 | 13.21 | 13.3 | 86.7 | 0.0 | -5.16 | 0.74 | 0.82 | 1.66 | 3.7 | 0.003 | 0.82 | 0.0 | 0.05 | 16.01 | 0.00 | 2.177 | 8.60 | 0.88 | 11.4 | 88.6 | 0.0 | -2.74 | 0.61 | 0.71 | 0.80 | 1.33 | 68448 | 8704 | 48 | 0 | 64 | 0 | 0 | logfile |
✔ | 7ZBU | 14591 | 2023-12-08 | 2022-03-24 | 4.31 | 3.01 | 4.34 | 4.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.04 | 0.01 | 2.071 | 10.41 | 0.21 | 3.3 | 96.7 | 0.0 | -0.68 | 0.72 | 0.64 | — | 2.2 | 0.004 | 0.87 | 0.0 | 0.05 | 12.99 | 0.01 | 2.105 | 20.46 | 0.11 | 5.8 | 94.2 | 0.0 | -1.29 | 1.41 | 0.73 | 0.70 | — | 8529 | 1074 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6VQC | 21348 | 2023-12-12 | 2020-02-04 | 3.8 | 4.16 | — | 4.1 | 0.008 | 0.96 | 0.0 | 0.07 | 11.02 | 0.00 | 2.305 | 3.42 | 0.61 | 2.6 | 97.1 | 0.2 | 0.62 | 0.65 | 0.77 | 1.73 | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 16.25 | 0.00 | 2.080 | 18.45 | 0.65 | 3.9 | 96.1 | 0.0 | 1.55 | 2.33 | 0.68 | 0.80 | 1.15 | 20991 | 2813 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P6J | 20264 | 2023-12-08 | 2019-06-04 | 3.4 | 4.20 | — | 4.1 | 0.011 | 1.15 | 0.0 | 0.06 | 15.76 | 0.01 | 1.901 | 7.84 | 0.77 | 6.2 | 93.8 | 0.0 | -4.33 | 0.66 | 0.81 | 1.47 | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 17.22 | 0.00 | 2.067 | 12.55 | 0.66 | 5.7 | 94.3 | 0.0 | 0.66 | 1.93 | 0.64 | 0.81 | 1.16 | 8841 | 1140 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 7LHE | 23337 | 2023-12-12 | 2021-01-22 | 3.3 | 4.03 | — | 3.8 | 0.007 | 1.16 | 0.0 | 0.05 | 16.35 | 0.01 | 1.680 | 7.12 | 0.00 | 10.8 | 88.9 | 0.3 | -2.90 | 0.80 | 0.75 | 1.33 | 3.8 | 0.003 | 0.74 | 0.0 | 0.04 | 16.95 | 0.00 | 2.085 | 13.70 | 0.19 | 10.5 | 89.3 | 0.2 | -1.30 | 0.72 | 0.83 | 0.81 | 0.71 | 73691 | 9192 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2023-12-12 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 23.22 | 0.04 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✔ | 6EBK | 9024 | 2023-12-12 | 2018-08-06 | 3.3 | 3.33 | — | 3.2 | 0.012 | 1.29 | 0.0 | 0.07 | 10.86 | 0.01 | 2.049 | 6.69 | 0.13 | 3.8 | 96.2 | 0.0 | -4.63 | 0.70 | 0.76 | 2.95 | 3.2 | 0.003 | 0.80 | 2.0 | 0.04 | 14.67 | 0.00 | 2.119 | 13.04 | 0.27 | 3.0 | 97.0 | 0.0 | -0.42 | 4.81 | 0.76 | 0.88 | 2.41 | 22212 | 2848 | 20 | 0 | 4 | 128 | 0 | logfile |
✔ | 7UTP | 26786 | 2023-12-15 | 2022-04-27 | 3.8 | 2.72 | 3.52 | 2.2 | 0.007 | 1.10 | 0.0 | 0.06 | 15.95 | 0.01 | 2.076 | 3.73 | 0.42 | 3.8 | 96.1 | 0.0 | -1.38 | 0.62 | 0.72 | 2.91 | 3.0 | 0.008 | 0.85 | 0.0 | 0.05 | 16.93 | 0.01 | 2.036 | 18.74 | 1.24 | 5.4 | 94.6 | 0.0 | -0.98 | 0.52 | 0.64 | 0.74 | 2.43 | 31056 | 3762 | 10 | 0 | 207 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2023-12-14 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.92 | 0.0 | 0.04 | 15.52 | 0.00 | 1.988 | 27.22 | 0.01 | 1.6 | 98.3 | 0.1 | 1.59 | 2.07 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 8AMW | 15527 | 2023-12-10 | 2022-08-04 | 3.0 | 3.27 | 3.03 | 3.2 | 0.005 | 0.61 | 0.0 | 0.04 | 11.06 | 0.01 | 2.245 | 3.30 | 0.44 | 3.9 | 96.1 | 0.0 | 1.57 | 0.63 | 0.87 | 3.65 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 13.83 | 0.00 | 2.142 | 4.88 | 1.06 | 3.7 | 96.3 | 0.0 | 2.47 | 0.31 | 0.66 | 0.88 | 2.48 | 15792 | 2032 | 21 | 0 | 16 | 5 | 0 | logfile |
✔ | 7WE8 | 32442 | 2023-12-14 | 2021-12-23 | 3.5 | 4.24 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.05 | 13.47 | 0.00 | 1.600 | 10.93 | 0.26 | 5.5 | 94.4 | 0.1 | -1.57 | 0.83 | 0.82 | 1.52 | 4.0 | 0.002 | 0.63 | 0.0 | 0.04 | 14.34 | 0.00 | 2.126 | 10.57 | 0.23 | 5.2 | 94.8 | 0.1 | -1.25 | 1.60 | 0.83 | 0.82 | 1.36 | 28585 | 3522 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 7KZX | 23092 | 2023-12-09 | 2020-12-10 | 4.0 | 4.50 | 4.05 | 4.2 | 0.006 | 0.81 | 0.0 | 0.05 | 15.75 | 0.01 | 2.031 | 19.41 | 0.00 | 9.3 | 90.5 | 0.2 | -2.29 | 0.78 | 0.80 | — | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 16.61 | 0.00 | 2.130 | 17.11 | 0.26 | 7.0 | 92.9 | 0.1 | -0.58 | 1.23 | 0.78 | 0.80 | — | 10432 | 1361 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A2Z | 15109 | 2023-12-10 | 2022-06-06 | 2.15 | 2.27 | 2.11 | 2.2 | 0.004 | 0.58 | 0.0 | 0.04 | 11.91 | 0.00 | 2.190 | 1.81 | 0.00 | 2.1 | 97.7 | 0.3 | -1.13 | 0.74 | 0.87 | 6.56 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.50 | 0.00 | 2.041 | 4.24 | 0.52 | 1.7 | 98.3 | 0.0 | 1.11 | 1.46 | 0.74 | 0.89 | 5.98 | 15060 | 1830 | 15 | 0 | 10 | 570 | 0 | logfile |
✔ | 6WKR | 21707 | 2023-12-15 | 2020-04-16 | 3.5 | 4.83 | 3.93 | 3.6 | 0.010 | 0.93 | 0.0 | 0.05 | 24.15 | 0.00 | 1.921 | 28.51 | 0.31 | 11.7 | 88.3 | 0.0 | -4.79 | 0.91 | 0.86 | 1.18 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 24.07 | 0.00 | 2.001 | 16.70 | 0.22 | 5.9 | 94.1 | 0.0 | -0.93 | 0.52 | 0.91 | 0.85 | 1.00 | 29296 | 3018 | 21 | 314 | 2 | 0 | 0 | logfile |
✔ | 7E9N | 31033 | 2023-12-16 | 2021-03-04 | 3.69 | 4.53 | — | 3.8 | 0.009 | 0.92 | 0.0 | 0.06 | 14.95 | 0.01 | 2.217 | 12.55 | 0.05 | 8.1 | 91.9 | 0.0 | -2.35 | 0.83 | 0.77 | 1.84 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 14.86 | 0.00 | 2.131 | 11.79 | 0.16 | 4.9 | 95.1 | 0.0 | -0.79 | 0.68 | 0.85 | 0.81 | 1.32 | 33519 | 4313 | 12 | 0 | 27 | 0 | 0 | logfile |
✔ | 8A2R | 15104 | 2023-12-10 | 2022-06-06 | 2.17 | 2.31 | 2.13 | 2.2 | 0.005 | 0.67 | 0.0 | 0.04 | 13.67 | 0.00 | 1.880 | 2.75 | 0.65 | 2.5 | 97.5 | 0.0 | -1.52 | 0.72 | 0.86 | 5.94 | 2.2 | 0.002 | 0.57 | 0.0 | 0.04 | 16.82 | 0.00 | 1.938 | 3.48 | 0.90 | 1.4 | 98.6 | 0.0 | 1.29 | 1.70 | 0.73 | 0.90 | 5.61 | 14990 | 1830 | 15 | 0 | 15 | 480 | 0 | logfile |
✔ | 7XY7 | 33513 | 2023-12-08 | 2022-05-31 | 3.26 | 2.43 | 3.29 | 2.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.86 | 0.00 | 2.141 | 5.62 | 0.40 | 2.0 | 98.0 | 0.0 | 1.03 | 0.77 | 0.78 | 2.13 | 2.2 | 0.003 | 0.53 | 0.0 | 0.04 | 16.27 | 0.00 | 2.100 | 6.19 | 0.53 | 2.5 | 97.5 | 0.0 | 1.08 | 1.01 | 0.77 | 0.79 | 2.00 | 7047 | 895 | 4 | 0 | 1 | 0 | 0 | logfile |