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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7B6D | 12052 | 2023-12-09 | 2020-12-07 | 4.27 | 2.60 | — | 2.5 | 0.005 | 0.87 | 0.0 | 0.05 | 14.40 | 0.01 | 2.049 | 32.99 | 0.43 | 10.2 | 89.7 | 0.1 | -2.46 | 0.78 | 0.74 | — | 2.5 | 0.003 | 0.72 | 0.0 | 0.05 | 14.41 | 0.00 | 2.080 | 23.40 | 0.00 | 9.1 | 90.9 | 0.0 | -1.38 | 1.33 | 0.78 | 0.75 | — | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E93 | 27954 | 2023-12-11 | 2022-08-26 | 3.71 | 4.07 | 3.71 | 4.0 | 0.005 | 0.83 | 4.0 | 0.05 | 15.92 | 0.01 | 2.066 | 8.37 | 0.65 | 8.7 | 91.3 | 0.0 | -2.88 | 0.64 | 0.81 | 2.05 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 15.45 | 0.00 | 2.132 | 7.21 | 0.65 | 8.9 | 91.1 | 0.0 | -1.52 | 1.27 | 0.66 | 0.82 | 2.04 | 16664 | 2320 | 11 | 0 | 18 | 0 | 0 | logfile |
✔ | 5TAP | 8381 | 2023-12-10 | 2016-09-10 | 4.4 | 4.55 | 4.56 | 4.4 | 0.004 | 0.88 | 4.0 | 0.05 | 10.08 | 0.01 | 1.373 | 4.46 | 0.54 | 9.9 | 89.9 | 0.2 | -4.98 | 0.78 | 0.77 | — | 4.4 | 0.004 | 0.75 | 0.0 | 0.04 | 12.33 | 0.00 | 2.005 | 14.69 | 0.00 | 11.7 | 88.3 | 0.1 | -1.66 | 0.87 | 0.78 | 0.79 | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 7SoY | 25363 | 2023-12-09 | 2021-11-01 | 3.4 | 4.73 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 12.63 | 0.00 | 2.231 | 12.96 | 0.37 | 1.7 | 98.3 | 0.0 | 1.32 | 0.90 | 0.83 | 0.53 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 14.33 | 0.00 | 2.076 | 14.51 | 0.22 | 2.4 | 97.6 | 0.0 | 1.48 | 0.49 | 0.91 | 0.85 | 0.39 | 12180 | 1529 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WFG | 32465 | 2023-12-09 | 2021-12-26 | 4.33 | 4.89 | — | 4.3 | 0.006 | 1.01 | 1.0 | 0.06 | 11.46 | 0.01 | 2.204 | 8.95 | 1.08 | 12.3 | 87.5 | 0.2 | -5.06 | 0.68 | 0.68 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.05 | 12.88 | 0.00 | 2.119 | 21.43 | 0.36 | 11.3 | 88.6 | 0.1 | -2.50 | 1.58 | 0.71 | 0.75 | — | 9836 | 1246 | 11 | 0 | 125 | 0 | 0 | logfile |
✔ | 8G85 | 29836 | 2023-12-12 | 2023-02-17 | 3.99 | 4.68 | 4.09 | 4.1 | 0.005 | 0.97 | 0.0 | 0.06 | 14.19 | 0.01 | 2.259 | 3.76 | 0.09 | 4.6 | 95.3 | 0.1 | -1.62 | 0.78 | 0.73 | 1.29 | 4.2 | 0.005 | 0.76 | 0.0 | 0.05 | 14.57 | 0.00 | 2.136 | 16.50 | 0.14 | 7.4 | 92.6 | 0.0 | -0.45 | 1.38 | 0.85 | 0.84 | 1.58 | 20090 | 2391 | 39 | 0 | 94 | 0 | 0 | logfile |
✔ | 7SH2 | 25122 | 2023-12-12 | 2021-10-07 | 3.23 | 3.55 | — | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 15.29 | 0.00 | 2.135 | 7.83 | 0.04 | 4.4 | 95.6 | 0.0 | 0.45 | 0.69 | 0.68 | 1.22 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 16.58 | 0.00 | 1.951 | 11.70 | 0.26 | 4.9 | 95.1 | 0.0 | 0.27 | 0.96 | 0.73 | 0.76 | 1.17 | 20933 | 2545 | 15 | 23 | 9 | 0 | 0 | logfile |
✔ | 7T8C | 25744 | 2023-12-14 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.04 | 10.96 | 0.00 | 2.130 | 11.08 | 0.00 | 4.6 | 95.4 | 0.0 | 0.62 | 1.08 | 0.66 | 0.61 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4o | 4721 | 2023-12-09 | 2019-03-22 | 4.2 | 4.81 | — | 4.6 | 0.006 | 1.21 | 0.0 | 0.06 | 12.71 | 0.01 | 1.774 | 10.07 | 0.48 | 8.2 | 91.8 | 0.0 | -4.45 | 0.64 | 0.71 | — | 4.6 | 0.003 | 0.77 | 0.0 | 0.04 | 13.28 | 0.00 | 1.957 | 16.13 | 0.10 | 6.6 | 93.4 | 0.0 | -0.37 | 1.02 | 0.64 | 0.72 | — | 9602 | 1182 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 5T9V | 8376 | 2023-12-10 | 2016-09-09 | 4.4 | 4.79 | 4.75 | 4.5 | 0.004 | 0.90 | 4.0 | 0.05 | 10.07 | 0.01 | 1.374 | 5.64 | 0.54 | 10.5 | 89.3 | 0.2 | -4.84 | 0.81 | 0.78 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 11.91 | 0.00 | 2.091 | 18.75 | 0.00 | 12.2 | 87.7 | 0.1 | -1.56 | 1.51 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 7KFT | 22855 | 2023-12-09 | 2020-10-14 | 3.4 | 3.68 | — | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 14.40 | 0.01 | 2.237 | 5.46 | 0.00 | 4.8 | 95.2 | 0.0 | -0.99 | 0.69 | 0.79 | 2.73 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 16.08 | 0.00 | 2.148 | 7.42 | 0.24 | 4.8 | 95.2 | 0.0 | 0.49 | 0.40 | 0.69 | 0.80 | 2.11 | 11680 | 1427 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TAZ | 8390 | 2023-12-10 | 2016-09-10 | 4.3 | 4.46 | 4.86 | 4.3 | 0.004 | 0.86 | 4.0 | 0.05 | 9.92 | 0.01 | 1.373 | 4.79 | 0.58 | 10.2 | 89.6 | 0.2 | -5.04 | 0.74 | 0.73 | — | 4.3 | 0.005 | 0.81 | 0.0 | 0.04 | 12.08 | 0.00 | 2.051 | 18.58 | 0.00 | 12.9 | 86.9 | 0.2 | -2.20 | 0.91 | 0.76 | 0.77 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✔ | 7T8B | 25743 | 2023-12-15 | 2021-12-16 | 3.8 | 2.77 | 3.90 | 2.3 | 0.002 | 0.47 | 0.0 | 0.04 | 8.77 | 0.00 | 2.205 | 7.91 | 1.40 | 4.3 | 95.6 | 0.2 | -0.32 | 0.73 | 0.72 | 2.28 | 2.3 | 0.004 | 0.79 | 0.0 | 0.04 | 15.34 | 0.00 | 2.042 | 17.37 | 0.48 | 5.2 | 94.8 | 0.0 | -0.13 | 0.84 | 0.73 | 0.73 | 1.33 | 33025 | 4131 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q9K | 13872 | 2023-12-14 | 2021-11-12 | 4.5 | 7.17 | — | 4.5 | 0.005 | 0.88 | 1.0 | 0.05 | 11.19 | 0.01 | 1.447 | 5.50 | 0.44 | 3.7 | 95.9 | 0.4 | 0.13 | 0.82 | 0.65 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.05 | 11.91 | 0.00 | 2.072 | 26.32 | 0.00 | 5.9 | 94.1 | 0.0 | -0.91 | 1.42 | 0.85 | 0.74 | — | 27225 | 3388 | 25 | 0 | 60 | 0 | 0 | logfile |
✔ | 7WFF | 32464 | 2023-12-15 | 2021-12-26 | 3.59 | 3.67 | — | 3.6 | 0.006 | 0.94 | 1.0 | 0.08 | 14.28 | 0.01 | 2.203 | 4.83 | 0.26 | 9.0 | 90.9 | 0.1 | -4.02 | 0.60 | 0.79 | 2.16 | 3.6 | 0.003 | 0.75 | 0.0 | 0.05 | 16.41 | 0.00 | 2.141 | 17.15 | 0.72 | 8.0 | 92.0 | 0.0 | -1.27 | 1.22 | 0.60 | 0.79 | 1.41 | 32124 | 4065 | 20 | 0 | 4 | 0 | 0 | logfile |
✔ | 6iD0 | 9646 | 2023-12-13 | 2018-09-07 | 2.9 | 3.04 | — | 3.0 | 0.009 | 1.39 | 19.0 | 0.10 | 16.13 | 0.01 | 1.607 | 10.97 | 1.46 | 7.0 | 91.9 | 1.0 | -2.86 | 0.63 | 0.68 | 2.82 | 3.0 | 0.004 | 0.71 | 0.0 | 0.04 | 17.50 | 0.00 | 1.998 | 10.64 | 3.46 | 6.3 | 93.4 | 0.3 | 0.37 | 0.78 | 0.67 | 0.76 | 2.35 | 78004 | 10389 | 48 | 405 | 16 | 0 | 0 | logfile |
✔ | 7CAK | 30333 | 2023-12-15 | 2020-06-08 | 3.58 | 3.74 | — | 3.5 | 0.027 | 1.67 | 3.0 | 0.09 | 12.23 | 0.01 | 1.082 | 48.79 | 1.80 | 9.4 | 89.8 | 0.8 | -4.79 | 0.72 | 0.69 | 2.67 | 3.5 | 0.004 | 0.71 | 0.0 | 0.05 | 13.04 | 0.00 | 2.026 | 13.29 | 0.15 | 6.1 | 93.7 | 0.1 | -1.32 | 1.24 | 0.78 | 0.78 | 2.09 | 30263 | 3771 | 27 | 0 | 60 | 0 | 0 | logfile |
✔ | 8C90 | 16497 | 2023-12-09 | 2023-01-21 | 3.15 | 3.51 | 3.31 | 3.1 | 0.002 | 0.38 | 0.0 | 0.03 | 21.87 | 0.00 | 1.866 | 5.45 | 0.00 | 5.1 | 94.8 | 0.0 | 0.48 | 0.79 | 0.79 | 1.77 | 3.2 | 0.005 | 0.63 | 0.0 | 0.04 | 22.31 | 0.00 | 2.032 | 13.25 | 0.45 | 7.5 | 92.5 | 0.0 | -1.01 | 0.52 | 0.81 | 0.85 | 1.91 | 64726 | 2183 | 22 | 2219 | 0 | 0 | 0 | logfile |
✔ | 8FN1 | 29303 | 2023-12-08 | 2022-12-26 | 2.88 | 2.15 | 2.86 | 1.9 | 0.004 | 0.59 | 0.0 | 0.06 | 9.15 | 0.00 | 2.173 | 7.25 | 0.23 | 2.5 | 97.5 | 0.0 | 1.17 | 0.78 | 0.79 | 4.36 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.02 | 0.00 | 2.229 | 6.89 | 2.04 | 3.0 | 97.0 | 0.0 | 1.47 | 0.47 | 0.78 | 0.80 | 3.87 | 8444 | 1116 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X5A | 33013 | 2023-12-09 | 2022-03-04 | 3.01 | 3.27 | 3.09 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 20.33 | 0.00 | 2.182 | 3.74 | 0.00 | 1.7 | 98.3 | 0.0 | 0.22 | 0.70 | 0.81 | 3.38 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 21.76 | 0.00 | 2.200 | 7.43 | 0.21 | 1.1 | 98.9 | 0.0 | 0.33 | 0.36 | 0.73 | 0.86 | 3.28 | 10686 | 1083 | 12 | 104 | 0 | 0 | 0 | logfile |