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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D9N | 27267 | 2024-01-18 | 2022-06-10 | 4.4 | 4.74 | 3.88 | 34.0 | 0.003 | 0.60 | 0.0 | 0.04 | 13.21 | 0.00 | 2.107 | 2.77 | 0.38 | 5.8 | 94.2 | 0.0 | -0.81 | 0.28 | -0.07 | — | 20.0 | 0.002 | 0.66 | 0.0 | 0.04 | 13.37 | 0.00 | 2.199 | 4.56 | 0.00 | 5.3 | 94.7 | 0.0 | 0.51 | 0.56 | 0.36 | -0.05 | — | 7186 | 902 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2024-01-20 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 16.65 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.003 | 0.74 | 0.0 | 0.04 | 17.82 | 0.00 | 1.266 | 16.96 | 1.92 | 6.8 | 93.2 | 0.0 | -1.73 | 1.79 | 0.39 | 0.21 | 0.53 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2024-01-18 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.49 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 10.0 | 0.004 | 0.83 | 3.0 | 0.05 | 16.74 | 0.01 | 1.659 | 17.27 | 2.30 | 6.4 | 93.5 | 0.2 | -0.97 | 1.04 | 0.41 | 0.18 | 0.03 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2024-01-18 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 3JAC | 6343 | 2024-01-20 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.07 | 13.57 | 0.01 | 1.926 | 81.43 | 0.00 | 28.0 | 70.8 | 1.2 | -5.43 | 3.68 | 0.54 | 0.60 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 1oED | 1044 | 2024-01-17 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 224.94 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.005 | 1.06 | 0.0 | 0.05 | 16.10 | 0.01 | 2.206 | 23.77 | 2.08 | 2.6 | 97.4 | 0.0 | 1.81 | 2.72 | 0.59 | 0.38 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2024-01-18 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.30 | 0.00 | 2.211 | 13.58 | 2.11 | 5.7 | 94.3 | 0.0 | -0.69 | 1.89 | 0.31 | 0.25 | 0.29 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2024-01-19 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.9 | 0.002 | 0.58 | 0.0 | 0.04 | 14.08 | 0.00 | 1.989 | 8.45 | 0.00 | 7.1 | 92.9 | 0.0 | -2.00 | 1.14 | 0.56 | 0.53 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 7PD4 | 13330 | 2024-01-17 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.74 | 0.00 | 2.064 | 24.98 | 0.00 | 6.5 | 93.5 | 0.0 | -0.78 | 1.47 | 0.73 | 0.74 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2024-01-19 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 5.90 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.002 | 0.55 | 0.0 | 0.04 | 12.95 | 0.00 | 1.911 | 11.79 | 0.00 | 4.7 | 95.3 | 0.0 | 0.22 | 1.22 | 0.78 | 0.52 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 7JGG | 22326 | 2024-01-17 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.44 | 0.0 | 0.03 | 12.76 | 0.00 | 1.973 | 75.99 | 0.00 | 4.7 | 95.3 | 0.0 | 1.92 | 1.72 | 0.66 | 0.70 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 7ELE | 31182 | 2024-01-19 | 2021-04-09 | 4.9 | 8.62 | — | 7.5 | 0.007 | 1.16 | 0.0 | 0.06 | 21.16 | 0.01 | 2.210 | 17.86 | 8.44 | 9.1 | 90.1 | 0.8 | -3.55 | 0.87 | 0.71 | — | 7.5 | 0.003 | 0.73 | 0.0 | 0.04 | 18.31 | 0.00 | 2.020 | 30.95 | 0.00 | 9.9 | 89.9 | 0.2 | -1.87 | 1.67 | 0.88 | 0.73 | — | 10733 | 1137 | 2 | 83 | 0 | 0 | 0 | logfile |
✔ | 7W0F | 32241 | 2024-01-20 | 2021-11-18 | 4.55 | 8.43 | — | 7.5 | 0.003 | 0.64 | 1.0 | 0.04 | 16.66 | 0.00 | 1.356 | 21.15 | 1.19 | 4.4 | 94.7 | 0.8 | -0.94 | 0.71 | 0.38 | — | 7.3 | 0.003 | 0.71 | 0.0 | 0.04 | 16.67 | 0.00 | 2.081 | 24.89 | 0.00 | 6.4 | 93.5 | 0.1 | -0.87 | 1.54 | 0.87 | 0.71 | — | 14097 | 1492 | 6 | 94 | 0 | 0 | 0 | logfile |
✔ | 8EXT | 28662 | 2024-01-18 | 2022-10-25 | 4.6 | 4.06 | 4.52 | 7.3 | 0.026 | 2.04 | 0.0 | 0.12 | 10.97 | 0.01 | 2.014 | 14.28 | 2.03 | 5.3 | 93.9 | 0.8 | -0.66 | 0.53 | 0.45 | — | 7.3 | 0.003 | 0.67 | 0.0 | 0.04 | 12.33 | 0.00 | 2.172 | 14.72 | 0.00 | 7.6 | 92.4 | 0.0 | -0.61 | 1.16 | 0.60 | 0.62 | — | 8846 | 1062 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-01-17 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ELD | 31181 | 2024-01-19 | 2021-04-09 | 4.6 | 9.12 | — | 7.4 | 0.012 | 1.41 | 6.0 | 0.11 | 19.72 | 0.00 | 2.446 | 8.52 | 10.68 | 2.9 | 96.2 | 0.9 | 3.37 | 0.79 | 0.50 | — | 7.1 | 0.003 | 0.74 | 0.0 | 0.04 | 18.50 | 0.00 | 2.067 | 29.76 | 0.00 | 6.0 | 93.5 | 0.5 | -0.37 | 1.47 | 0.89 | 0.78 | — | 11282 | 1137 | 2 | 109 | 0 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2024-01-17 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.002 | 0.66 | 0.0 | 0.03 | 16.40 | 0.00 | 2.040 | 12.47 | 1.32 | 3.9 | 96.1 | 0.0 | -0.28 | 1.43 | 0.61 | 0.75 | 0.76 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 6ZPG | 11338 | 2024-01-17 | 2020-07-08 | 4.6 | 4.29 | — | 7.0 | 0.004 | 0.99 | 0.0 | 0.05 | 15.64 | 0.01 | 2.313 | 5.51 | 0.25 | 5.6 | 94.4 | 0.0 | -3.85 | 0.60 | 0.55 | — | 7.0 | 0.003 | 0.86 | 0.0 | 0.05 | 15.23 | 0.00 | 2.219 | 17.45 | 0.00 | 6.1 | 93.9 | 0.0 | 0.31 | 2.22 | 0.65 | 0.63 | — | 3808 | 463 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QVU | 4657 | 2024-01-18 | 2019-03-05 | 4.2 | 6.05 | 4.20 | 6.9 | 0.006 | 1.31 | 0.0 | 0.06 | 12.34 | 0.01 | 2.191 | 10.73 | 1.99 | 9.3 | 90.7 | 0.0 | -4.21 | 0.65 | 0.75 | — | 7.0 | 0.003 | 0.88 | 0.0 | 0.05 | 11.30 | 0.01 | 2.202 | 18.48 | 0.00 | 7.1 | 92.9 | 0.0 | -0.51 | 1.38 | 0.66 | 0.76 | — | 9272 | 1198 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RHZ | 24472 | 2024-01-19 | 2021-07-19 | 4.48 | 7.32 | 5.01 | 7.0 | 0.020 | 1.62 | 32.0 | 0.18 | 21.17 | 0.01 | 2.015 | 9.11 | 0.59 | 3.5 | 96.5 | 0.0 | -1.60 | 0.85 | 0.71 | — | 7.0 | 0.003 | 0.63 | 0.0 | 0.04 | 21.14 | 0.00 | 2.037 | 12.35 | 0.00 | 4.8 | 95.2 | 0.0 | 0.51 | 1.29 | 0.88 | 0.78 | — | 12550 | 615 | 4 | 88 | 0 | 0 | 5875 | logfile |