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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LQF | 23484 | 2024-01-17 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.155 | 6.28 | 251.0 | 0.42 | 27.36 | 0.03 | 1.648 | 200.72 | 26.56 | 66.8 | 29.3 | 3.9 | -9.78 | 2.03 | 0.69 | 0.87 | 2.76 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2024-01-17 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.018 | 1.82 | 0.0 | 0.06 | 18.29 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.54 | 13.0 | 0.23 | 31.76 | 0.03 | 1.584 | 57.12 | 19.78 | 66.7 | 30.4 | 3.0 | -10.84 | 0.67 | 0.73 | 0.90 | 3.59 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2024-01-17 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.08 | 246.0 | 0.39 | 26.91 | 0.02 | 1.698 | 131.43 | 25.00 | 60.8 | 38.5 | 0.7 | -8.74 | 1.57 | 0.65 | 0.90 | 1.60 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2024-01-17 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.079 | 6.01 | 25.0 | 0.42 | 24.42 | 0.05 | 1.656 | 304.50 | 59.05 | 52.0 | 4.7 | 43.3 | -10.74 | 2.55 | 0.44 | 0.59 | 3.08 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2024-01-17 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.190 | 6.52 | 60.0 | 0.43 | 29.21 | 0.04 | 1.639 | 169.69 | 15.48 | 50.0 | 38.3 | 11.7 | -7.72 | 2.21 | 0.63 | 0.89 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2024-01-19 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 14.04 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.17 | 236.0 | 0.13 | 17.13 | 0.02 | 1.379 | 136.31 | 0.01 | 44.3 | 52.3 | 3.4 | -7.53 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2024-01-19 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.88 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 57.0 | 0.11 | 15.92 | 0.02 | 0.366 | 109.75 | 0.00 | 43.4 | 55.0 | 1.6 | -7.46 | 2.20 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2024-01-18 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.73 | 1.0 | 0.14 | 24.21 | 0.01 | 1.955 | 121.88 | 20.00 | 43.0 | 57.0 | 0.0 | -6.80 | 1.44 | 0.64 | 0.85 | 2.89 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2024-01-18 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.79 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.045 | 3.09 | 64.0 | 0.12 | 21.30 | 0.02 | 1.887 | 101.09 | 29.26 | 40.4 | 58.0 | 1.7 | -7.66 | 2.88 | 0.73 | 0.82 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2024-01-19 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.15 | 178.0 | 0.30 | 24.80 | 0.02 | 1.776 | 108.91 | 21.76 | 35.4 | 64.6 | 0.0 | -7.62 | 3.47 | 0.65 | 0.87 | 3.27 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2024-01-17 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.17 | 0.0 | 0.04 | 10.44 | 0.00 | 2.149 | 15.78 | 0.00 | 35.3 | 64.7 | 0.0 | -5.53 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2024-01-19 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.2 | 0.110 | 4.32 | 163.0 | 0.30 | 24.12 | 0.02 | 1.769 | 115.03 | 20.14 | 35.2 | 64.8 | 0.0 | -8.00 | 1.14 | 0.67 | 0.87 | 3.69 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2024-01-18 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2024-01-17 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.96 | 0.0 | 0.06 | 16.99 | 0.00 | 2.068 | 20.90 | 16.08 | 31.5 | 68.5 | 0.0 | -5.06 | 0.73 | 0.51 | 0.66 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR6 | 34047 | 2024-01-17 | 2022-08-09 | 4.8 | 5.13 | 4.65 | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 25.60 | 0.00 | 2.291 | 7.11 | 3.30 | 15.1 | 84.9 | 0.0 | -5.39 | 0.81 | 0.74 | — | 4.7 | 0.007 | 0.94 | 0.0 | 0.05 | 26.19 | 0.01 | 2.024 | 54.69 | 0.00 | 30.2 | 69.8 | 0.0 | -5.37 | 0.82 | 0.83 | 0.81 | — | 4248 | 220 | 5 | 118 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2024-01-20 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.07 | 13.57 | 0.01 | 1.926 | 81.43 | 0.00 | 28.0 | 70.8 | 1.2 | -5.43 | 3.68 | 0.54 | 0.60 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 7XYM | 33522 | 2024-01-20 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.10 | 0.0 | 0.06 | 16.58 | 0.01 | 2.073 | 25.91 | 2.02 | 27.6 | 70.7 | 1.7 | -4.84 | 1.40 | 0.69 | 0.79 | 1.86 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2024-01-18 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.67 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.96 | 149.0 | 0.19 | 20.93 | 0.02 | 0.739 | 52.46 | 23.20 | 26.6 | 70.8 | 2.6 | -6.91 | 1.64 | 0.75 | 0.86 | 2.22 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 6oSM | 20186 | 2024-01-17 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | 3.4 | 0.007 | 1.20 | 0.0 | 0.07 | 15.46 | 0.00 | 2.162 | 23.54 | 11.71 | 25.7 | 74.3 | 0.0 | -5.10 | 1.14 | 0.45 | 0.75 | 3.04 | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2024-01-19 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 15.79 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.010 | 1.37 | 0.0 | 0.06 | 17.52 | 0.01 | 1.942 | 39.82 | 0.00 | 25.6 | 73.7 | 0.7 | -4.86 | 1.95 | 0.68 | 0.68 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |