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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B3A | 15824 | 2024-01-17 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.122 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.079 | 6.01 | 25.0 | 0.42 | 24.42 | 0.05 | 1.656 | 304.50 | 59.05 | 52.0 | 4.7 | 43.3 | -10.74 | 2.55 | 0.44 | 0.59 | 3.08 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2024-01-17 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.190 | 6.52 | 60.0 | 0.43 | 29.21 | 0.04 | 1.639 | 169.69 | 15.48 | 50.0 | 38.3 | 11.7 | -7.72 | 2.21 | 0.63 | 0.89 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2024-01-17 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.155 | 6.28 | 251.0 | 0.42 | 27.36 | 0.03 | 1.648 | 200.72 | 26.56 | 66.8 | 29.3 | 3.9 | -9.78 | 2.03 | 0.69 | 0.87 | 2.76 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2024-01-19 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2024-01-19 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.50 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.91 | 0.0 | 0.04 | 18.23 | 0.00 | 1.845 | 75.77 | 12.68 | 22.2 | 74.0 | 3.8 | -4.55 | 0.83 | 0.39 | 0.73 | 1.17 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 8oL2 | 16942 | 2024-01-17 | 2023-03-30 | 3.0 | 3.17 | 1.54 | 3.3 | 0.004 | 0.45 | 0.0 | 0.05 | 9.08 | 0.00 | 2.275 | 10.00 | 4.35 | 3.4 | 96.6 | 0.0 | -2.34 | 0.48 | 0.91 | 5.22 | 3.3 | 0.007 | 0.72 | 0.0 | 0.06 | 15.45 | 0.00 | 2.361 | 5.65 | 9.13 | 8.6 | 87.9 | 3.4 | -3.19 | 0.46 | 0.43 | 0.90 | 5.94 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2024-01-19 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 14.04 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.17 | 236.0 | 0.13 | 17.13 | 0.02 | 1.379 | 136.31 | 0.01 | 44.3 | 52.3 | 3.4 | -7.53 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2024-01-17 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.018 | 1.82 | 0.0 | 0.06 | 18.29 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.54 | 13.0 | 0.23 | 31.76 | 0.03 | 1.584 | 57.12 | 19.78 | 66.7 | 30.4 | 3.0 | -10.84 | 0.67 | 0.73 | 0.90 | 3.59 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2024-01-20 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.91 | 0.0 | 0.04 | 11.23 | 0.00 | 2.163 | 16.74 | 0.00 | 15.9 | 81.4 | 2.7 | -1.48 | 0.92 | 0.65 | 0.61 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2024-01-18 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.67 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.96 | 149.0 | 0.19 | 20.93 | 0.02 | 0.739 | 52.46 | 23.20 | 26.6 | 70.8 | 2.6 | -6.91 | 1.64 | 0.75 | 0.86 | 2.22 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 6JXC | 9893 | 2024-01-20 | 2019-04-23 | 4.1 | 4.20 | — | 4.1 | 0.018 | 1.71 | 0.0 | 0.09 | 8.99 | 0.01 | 2.221 | 4.77 | 0.38 | 9.3 | 87.7 | 3.0 | -1.28 | 0.50 | 0.61 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.04 | 12.11 | 0.00 | 2.106 | 10.45 | 0.00 | 11.6 | 86.4 | 2.0 | 0.22 | 0.97 | 0.55 | 0.69 | — | 15270 | 2345 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2024-01-19 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.41 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.3 | 0.004 | 0.98 | 3.0 | 0.05 | 20.97 | 0.01 | 1.647 | 17.79 | 5.42 | 7.3 | 90.8 | 1.9 | -2.16 | 1.24 | 0.55 | 0.78 | 1.94 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2024-01-18 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.79 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.045 | 3.09 | 64.0 | 0.12 | 21.30 | 0.02 | 1.887 | 101.09 | 29.26 | 40.4 | 58.0 | 1.7 | -7.66 | 2.88 | 0.73 | 0.82 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 8JoU | 36462 | 2024-01-19 | 2023-06-08 | 4.1 | 6.13 | 3.95 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 12.09 | 0.01 | 0.759 | 16.82 | 0.49 | 7.7 | 90.4 | 1.9 | -1.54 | 0.17 | 0.37 | — | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 11.93 | 0.00 | 2.055 | 23.73 | 0.08 | 8.5 | 89.8 | 1.7 | -1.53 | 1.41 | 0.23 | 0.86 | — | 62425 | 8135 | 70 | 0 | 590 | 0 | 0 | logfile |
✔ | 7XYM | 33522 | 2024-01-20 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.10 | 0.0 | 0.06 | 16.58 | 0.01 | 2.073 | 25.91 | 2.02 | 27.6 | 70.7 | 1.7 | -4.84 | 1.40 | 0.69 | 0.79 | 1.86 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2024-01-19 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.88 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 57.0 | 0.11 | 15.92 | 0.02 | 0.366 | 109.75 | 0.00 | 43.4 | 55.0 | 1.6 | -7.46 | 2.20 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2024-01-19 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.13 | 2.0 | 0.05 | 15.40 | 0.01 | 2.076 | 16.90 | 0.00 | 18.4 | 80.1 | 1.5 | -3.44 | 1.30 | 0.18 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2024-01-19 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.005 | 0.83 | 0.0 | 0.04 | 11.98 | 0.00 | 2.066 | 18.47 | 0.00 | 10.9 | 87.8 | 1.3 | -1.52 | 1.64 | 0.55 | 0.74 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2024-01-17 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 15.38 | 0.00 | 2.197 | 14.66 | 0.00 | 10.0 | 88.8 | 1.2 | -2.49 | 3.10 | 0.25 | 0.69 | 0.37 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 3JAC | 6343 | 2024-01-20 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.07 | 13.57 | 0.01 | 1.926 | 81.43 | 0.00 | 28.0 | 70.8 | 1.2 | -5.43 | 3.68 | 0.54 | 0.60 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |