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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J2P | 5499 | 2024-01-19 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.50 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.91 | 0.0 | 0.04 | 18.23 | 0.00 | 1.845 | 75.77 | 12.68 | 22.2 | 74.0 | 3.8 | -4.55 | 0.83 | 0.39 | 0.73 | 1.17 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3LoS | 5137 | 2024-01-19 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2024-01-19 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.41 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.3 | 0.004 | 0.98 | 3.0 | 0.05 | 20.97 | 0.01 | 1.647 | 17.79 | 5.42 | 7.3 | 90.8 | 1.9 | -2.16 | 1.24 | 0.55 | 0.78 | 1.94 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2024-01-20 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.20 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 17.67 | 0.01 | 2.052 | 10.47 | 3.84 | 10.2 | 89.3 | 0.5 | -2.43 | 1.16 | 0.62 | 0.75 | 0.93 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✔ | 7ASK | 11895 | 2024-01-19 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.13 | 2.0 | 0.05 | 15.40 | 0.01 | 2.076 | 16.90 | 0.00 | 18.4 | 80.1 | 1.5 | -3.44 | 1.30 | 0.18 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2024-01-20 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.91 | 0.0 | 0.04 | 11.23 | 0.00 | 2.163 | 16.74 | 0.00 | 15.9 | 81.4 | 2.7 | -1.48 | 0.92 | 0.65 | 0.61 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2024-01-19 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 17.70 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.92 | 0.0 | 0.05 | 12.44 | 0.00 | 2.031 | 20.25 | 0.00 | 7.9 | 91.3 | 0.8 | -0.89 | 1.21 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 8GRN | 34209 | 2024-01-19 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.95 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 18.91 | 0.01 | 1.901 | 8.93 | 3.40 | 10.0 | 89.4 | 0.6 | -0.19 | 0.93 | 0.45 | 0.72 | 2.59 | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2024-01-20 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.35 | 0.00 | 1.970 | 12.40 | 2.16 | 7.6 | 92.0 | 0.4 | -1.25 | 1.00 | 0.65 | 0.78 | 1.21 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 8GSo | 34237 | 2024-01-19 | 2022-09-06 | 3.3 | 3.69 | 3.38 | 3.7 | 0.013 | 1.66 | 18.0 | 0.11 | 25.12 | 0.01 | 1.194 | 20.44 | 41.49 | 17.0 | 76.3 | 6.7 | -5.21 | 0.57 | 0.72 | 1.47 | 3.7 | 0.004 | 0.84 | 0.0 | 0.04 | 17.91 | 0.01 | 2.175 | 14.22 | 4.43 | 13.5 | 86.1 | 0.4 | -0.37 | 1.07 | 0.55 | 0.83 | 1.87 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRo | 34210 | 2024-01-19 | 2022-09-02 | 3.5 | 3.98 | 3.66 | 3.9 | 0.013 | 1.67 | 17.0 | 0.11 | 25.25 | 0.01 | 1.194 | 18.95 | 41.49 | 16.3 | 77.1 | 6.6 | -5.21 | 0.60 | 0.74 | 1.94 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 18.54 | 0.01 | 2.138 | 16.26 | 5.30 | 12.5 | 87.2 | 0.3 | -0.46 | 1.30 | 0.58 | 0.82 | 1.94 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRS | 34214 | 2024-01-17 | 2022-09-02 | 3.3 | 3.91 | 3.48 | 3.8 | 0.016 | 1.94 | 6.0 | 0.13 | 26.31 | 0.02 | 1.285 | 16.08 | 44.03 | 21.3 | 72.9 | 5.8 | -5.46 | 0.61 | 0.72 | 1.86 | 3.8 | 0.004 | 0.82 | 0.0 | 0.04 | 18.81 | 0.01 | 2.211 | 16.75 | 6.42 | 11.5 | 88.0 | 0.5 | -1.15 | 1.94 | 0.51 | 0.81 | 1.51 | 5148 | 626 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6Ji1 | 9832 | 2024-01-20 | 2019-02-19 | 4.1 | 4.20 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.06 | 11.77 | 0.01 | 2.250 | 7.50 | 0.57 | 11.2 | 83.5 | 5.3 | -4.78 | 0.61 | 0.71 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 12.66 | 0.01 | 2.052 | 10.58 | 0.00 | 5.6 | 93.8 | 0.7 | -1.07 | 0.89 | 0.56 | 0.69 | — | 13992 | 1848 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2024-01-19 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 24.00 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 16.97 | 0.01 | 2.125 | 15.51 | 3.61 | 11.4 | 87.9 | 0.8 | -1.21 | 1.76 | 0.54 | 0.77 | 1.51 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2024-01-19 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.005 | 0.83 | 0.0 | 0.04 | 11.98 | 0.00 | 2.066 | 18.47 | 0.00 | 10.9 | 87.8 | 1.3 | -1.52 | 1.64 | 0.55 | 0.74 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2024-01-17 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.90 | 0.00 | 2.192 | 16.63 | 0.00 | 10.2 | 89.3 | 0.4 | -2.86 | 2.17 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2024-01-20 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.07 | 13.57 | 0.01 | 1.926 | 81.43 | 0.00 | 28.0 | 70.8 | 1.2 | -5.43 | 3.68 | 0.54 | 0.60 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2024-01-19 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.30 | 0.00 | 2.069 | 13.36 | 5.80 | 7.8 | 91.5 | 0.6 | -0.34 | 1.75 | 0.59 | 0.73 | 1.09 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN5 | 3240 | 2024-01-18 | 2015-11-10 | 4.3 | 4.62 | — | 4.3 | 0.012 | 1.85 | 28.0 | 0.11 | 18.82 | 0.01 | 2.074 | 13.59 | 14.00 | 11.4 | 84.3 | 4.3 | -1.91 | 0.65 | 0.62 | — | 4.3 | 0.004 | 0.83 | 0.0 | 0.04 | 13.87 | 0.01 | 2.105 | 22.16 | 0.00 | 9.3 | 90.0 | 0.7 | -0.69 | 1.02 | 0.70 | 0.79 | — | 9645 | 1227 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2024-01-17 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.19 | 0.0 | 0.06 | 17.22 | 0.01 | 2.007 | 33.74 | 4.89 | 10.6 | 88.3 | 1.2 | -2.44 | 1.71 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |