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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HiA | 34813 | 2024-01-18 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 7JSH | 22454 | 2024-01-18 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2024-01-17 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 8.08 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 0.99 | 0.0 | 0.02 | 6.66 | 0.00 | 2.225 | 16.71 | 0.00 | 11.5 | 88.3 | 0.2 | -3.14 | 5.69 | 0.84 | 0.64 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2024-01-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 22.03 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.90 | 0.0 | 0.04 | 27.59 | 0.01 | 1.795 | 82.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.58 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7QKZ | 14058 | 2024-01-17 | 2021-12-19 | 2.65 | 2.79 | 2.28 | 3.2 | 0.013 | 2.86 | 9.0 | 0.34 | 18.75 | 0.02 | 2.498 | 0.59 | 0.00 | 9.9 | 90.1 | 0.0 | -1.61 | 0.34 | 0.61 | 7.02 | 2.7 | 0.011 | 3.64 | 0.0 | 0.38 | 18.80 | 0.01 | 2.113 | 13.00 | 1.01 | 2.5 | 97.5 | 0.0 | -1.04 | 5.47 | 0.34 | 0.64 | 6.35 | 1701 | 99 | 9 | 0 | 0 | 0 | 891 | logfile |
✔ | 8A7Q | 15224 | 2024-01-17 | 2022-06-21 | 2.8 | 3.63 | 2.72 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 11.64 | 0.00 | 2.197 | 7.83 | 0.00 | 3.2 | 96.8 | 0.0 | -5.05 | 0.45 | 0.75 | 5.43 | 3.4 | 0.005 | 1.11 | 0.0 | 0.05 | 15.43 | 0.00 | 2.102 | 16.86 | 3.42 | 8.9 | 91.1 | 0.0 | -4.99 | 5.24 | 0.41 | 0.75 | 3.02 | 6492 | 768 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo0 | 26636 | 2024-01-19 | 2022-04-12 | 3.4 | 4.47 | — | 3.5 | 0.003 | 2.23 | 0.0 | 0.11 | 29.51 | 0.00 | 2.117 | 7.29 | 2.04 | 6.4 | 93.6 | 0.0 | -0.20 | 0.73 | 0.34 | 1.64 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 30.22 | 0.01 | 2.113 | 20.62 | 4.08 | 9.1 | 90.9 | 0.0 | -2.99 | 5.12 | 0.84 | 0.62 | 1.93 | 10697 | 112 | 4 | 455 | 7 | 0 | 0 | logfile |
✔ | 7JoA | 22409 | 2024-01-20 | 2020-08-06 | 3.3 | 3.05 | — | 3.2 | 0.009 | 0.78 | 0.0 | 0.04 | 25.95 | 0.01 | 2.206 | 6.32 | 0.00 | 6.5 | 93.5 | 0.0 | -0.33 | 0.79 | 0.82 | 1.49 | 3.2 | 0.003 | 0.57 | 0.0 | 0.03 | 26.00 | 0.00 | 2.273 | 6.79 | 1.24 | 1.7 | 98.3 | 0.0 | 1.94 | 4.78 | 0.81 | 0.86 | 1.41 | 14994 | 1125 | 11 | 290 | 1 | 0 | 0 | logfile |
✔ | 7RTM | 24683 | 2024-01-18 | 2021-08-13 | 3.4 | 3.54 | 3.61 | 20.0 | 0.031 | 3.05 | 44.0 | 0.18 | 16.56 | 0.03 | 1.051 | 1.40 | 2.80 | 6.8 | 93.0 | 0.3 | -1.12 | 0.10 | 0.04 | 0.21 | 3.5 | 0.003 | 0.83 | 0.0 | 0.04 | 15.98 | 0.00 | 2.134 | 10.79 | 2.20 | 5.4 | 94.6 | 0.1 | 0.27 | 4.69 | 0.66 | 0.78 | 1.34 | 9161 | 1142 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7B5i | 12034 | 2024-01-19 | 2020-12-03 | 2.8 | 2.89 | 2.91 | 2.8 | 0.006 | 0.81 | 0.0 | 0.05 | 13.15 | 0.01 | 2.309 | 4.79 | 0.26 | 3.7 | 96.3 | 0.0 | -1.72 | 0.64 | 0.84 | 3.97 | 2.8 | 0.005 | 0.66 | 0.0 | 0.05 | 15.75 | 0.00 | 2.133 | 3.66 | 1.96 | 3.4 | 96.6 | 0.0 | -0.74 | 4.58 | 0.67 | 0.87 | 3.99 | 64458 | 8100 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ET9 | 28589 | 2024-01-18 | 2022-10-16 | 3.61 | 3.97 | 3.84 | 3.9 | 0.005 | 0.61 | 0.0 | 0.04 | 10.84 | 0.01 | 2.058 | 8.46 | 0.52 | 1.8 | 98.2 | 0.0 | 1.38 | 0.46 | 0.67 | 2.05 | 4.0 | 0.003 | 0.53 | 0.0 | 0.03 | 14.51 | 0.00 | 1.920 | 8.72 | 2.88 | 2.7 | 97.3 | 0.0 | 1.32 | 4.54 | 0.47 | 0.68 | 1.99 | 7685 | 517 | 1 | 0 | 1 | 0 | 3796 | logfile |
✔ | 7M65 | 23689 | 2024-01-17 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.050 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.003 | 0.82 | 0.0 | 0.04 | 11.76 | 0.00 | 2.235 | 19.11 | 0.00 | 14.5 | 85.5 | 0.0 | -6.08 | 4.41 | 0.51 | 0.72 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7ooP | 13010 | 2024-01-19 | 2021-05-28 | 2.9 | 2.93 | 2.83 | 2.8 | 0.007 | 0.92 | 0.0 | 0.09 | 14.61 | 0.01 | 1.721 | 4.94 | 0.00 | 4.7 | 95.2 | 0.1 | -1.58 | 0.80 | 0.78 | 2.94 | 2.9 | 0.004 | 0.69 | 1.0 | 0.04 | 16.53 | 0.00 | 1.937 | 10.62 | 1.89 | 4.2 | 95.8 | 0.0 | 0.40 | 4.41 | 0.82 | 0.83 | 2.78 | 62441 | 8386 | 32 | 103 | 49 | 0 | 0 | logfile |
✔ | 7X0V | 32926 | 2024-01-19 | 2022-02-22 | 3.2 | 3.39 | — | 3.3 | 0.005 | 0.61 | 5.0 | 0.05 | 10.89 | 0.00 | 1.018 | 6.95 | 3.50 | 4.9 | 95.1 | 0.0 | -5.90 | 0.79 | 0.77 | 1.76 | 3.3 | 0.005 | 0.77 | 0.0 | 0.05 | 16.13 | 0.00 | 1.815 | 11.97 | 2.80 | 6.3 | 93.7 | 0.0 | -0.17 | 4.29 | 0.82 | 0.86 | 1.57 | 65000 | 8440 | 48 | 0 | 48 | 16 | 0 | logfile |
✔ | 7EJE | 31160 | 2024-01-18 | 2021-04-02 | 3.98 | 4.18 | — | 4.0 | 0.009 | 1.30 | 0.0 | 0.05 | 15.52 | 0.00 | 1.454 | 41.99 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.58 | 0.73 | 1.42 | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 18.54 | 0.00 | 1.907 | 15.57 | 3.36 | 4.2 | 94.8 | 1.0 | 0.29 | 4.28 | 0.63 | 0.84 | 1.39 | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 6WUT | 21918 | 2024-01-18 | 2020-05-05 | 3.0 | 3.08 | — | 3.1 | 0.008 | 0.89 | 0.0 | 0.05 | 13.93 | 0.01 | 2.253 | 3.66 | 5.79 | 6.2 | 93.8 | 0.0 | -4.07 | 0.70 | 0.82 | 3.81 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 15.57 | 0.00 | 2.168 | 5.00 | 2.36 | 4.1 | 95.9 | 0.0 | -0.10 | 4.27 | 0.68 | 0.83 | 3.20 | 8218 | 1087 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0J | 21000 | 2024-01-20 | 2019-11-18 | 3.78 | 3.93 | — | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 10.19 | 0.01 | 2.373 | 5.04 | 0.00 | 5.8 | 94.0 | 0.3 | -3.23 | 0.83 | 0.83 | 2.89 | 3.8 | 0.004 | 0.71 | 0.0 | 0.05 | 14.22 | 0.00 | 2.175 | 13.67 | 2.19 | 6.7 | 93.3 | 0.0 | -1.66 | 4.21 | 0.83 | 0.83 | 2.58 | 15252 | 2010 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JC3 | 9793 | 2024-01-17 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.003 | 0.66 | 0.0 | 0.04 | 13.83 | 0.00 | 2.135 | 12.18 | 0.00 | 5.7 | 94.3 | 0.0 | 1.33 | 4.20 | 0.43 | 0.80 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 7X96 | 33068 | 2024-01-17 | 2022-03-15 | 3.4 | 4.29 | 3.35 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 15.95 | 0.00 | 2.101 | 5.71 | 0.00 | 8.8 | 91.2 | 0.0 | -1.35 | 0.74 | 0.82 | 3.22 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.75 | 0.00 | 2.070 | 9.77 | 1.37 | 9.7 | 90.3 | 0.0 | -0.85 | 4.17 | 0.73 | 0.81 | 3.57 | 6586 | 427 | 4 | 0 | 6 | 0 | 3184 | logfile |
✔ | 6MUX | 9259 | 2024-01-18 | 2018-10-23 | 3.9 | 4.13 | 3.88 | 4.0 | 0.009 | 1.22 | 0.0 | 0.07 | 15.13 | 0.01 | 2.149 | 7.40 | 0.80 | 11.0 | 88.9 | 0.2 | -4.69 | 0.77 | 0.82 | 1.35 | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 17.34 | 0.00 | 2.062 | 13.69 | 3.11 | 5.6 | 94.4 | 0.0 | -1.47 | 3.98 | 0.78 | 0.82 | 1.04 | 60284 | 7501 | 35 | 0 | 0 | 0 | 0 | logfile |