The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5M6S | 3451 | 2024-01-17 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.65 | 0.0 | 0.03 | 17.89 | 0.00 | 1.955 | 10.05 | 0.00 | 6.2 | 93.8 | 0.0 | 1.72 | 2.25 | 0.03 | 0.07 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 8GRS | 34214 | 2024-01-17 | 2022-09-02 | 3.3 | 3.91 | 3.48 | 3.8 | 0.016 | 1.94 | 6.0 | 0.13 | 26.31 | 0.02 | 1.285 | 16.08 | 44.03 | 21.3 | 72.9 | 5.8 | -5.46 | 0.61 | 0.72 | 1.86 | 3.8 | 0.004 | 0.82 | 0.0 | 0.04 | 18.81 | 0.01 | 2.211 | 16.75 | 6.42 | 11.5 | 88.0 | 0.5 | -1.15 | 1.94 | 0.51 | 0.81 | 1.51 | 5148 | 626 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8GSo | 34237 | 2024-01-19 | 2022-09-06 | 3.3 | 3.69 | 3.38 | 3.7 | 0.013 | 1.66 | 18.0 | 0.11 | 25.12 | 0.01 | 1.194 | 20.44 | 41.49 | 17.0 | 76.3 | 6.7 | -5.21 | 0.57 | 0.72 | 1.47 | 3.7 | 0.004 | 0.84 | 0.0 | 0.04 | 17.91 | 0.01 | 2.175 | 14.22 | 4.43 | 13.5 | 86.1 | 0.4 | -0.37 | 1.07 | 0.55 | 0.83 | 1.87 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRo | 34210 | 2024-01-19 | 2022-09-02 | 3.5 | 3.98 | 3.66 | 3.9 | 0.013 | 1.67 | 17.0 | 0.11 | 25.25 | 0.01 | 1.194 | 18.95 | 41.49 | 16.3 | 77.1 | 6.6 | -5.21 | 0.60 | 0.74 | 1.94 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 18.54 | 0.01 | 2.138 | 16.26 | 5.30 | 12.5 | 87.2 | 0.3 | -0.46 | 1.30 | 0.58 | 0.82 | 1.94 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRN | 34209 | 2024-01-19 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.95 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 18.91 | 0.01 | 1.901 | 8.93 | 3.40 | 10.0 | 89.4 | 0.6 | -0.19 | 0.93 | 0.45 | 0.72 | 2.59 | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2024-01-17 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.90 | 0.00 | 2.192 | 16.63 | 0.00 | 10.2 | 89.3 | 0.4 | -2.86 | 2.17 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2024-01-20 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.05 | 18.47 | 0.00 | 2.069 | 15.66 | 9.47 | 10.2 | 89.3 | 0.5 | -2.20 | 0.81 | 0.49 | 0.84 | 0.92 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J8J | 9782 | 2024-01-19 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.90 | 0.01 | 1.829 | 71.00 | 28.80 | 2.5 | 96.2 | 1.3 | 2.79 | 0.59 | 0.76 | 1.66 | 3.4 | 0.005 | 0.82 | 0.0 | 0.07 | 18.15 | 0.00 | 2.100 | 10.52 | 5.05 | 3.9 | 95.8 | 0.3 | 0.43 | 1.41 | 0.59 | 0.83 | 1.79 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8i | 9782 | 2024-01-19 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.89 | 0.01 | 1.829 | 71.34 | 28.73 | 2.5 | 96.2 | 1.3 | 2.78 | 0.59 | 0.76 | 1.66 | 3.4 | 0.003 | 0.75 | 0.0 | 0.06 | 18.18 | 0.00 | 2.151 | 9.17 | 5.05 | 4.0 | 95.8 | 0.2 | 0.85 | 1.41 | 0.59 | 0.82 | 1.74 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2024-01-18 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.79 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.045 | 3.09 | 64.0 | 0.12 | 21.30 | 0.02 | 1.887 | 101.09 | 29.26 | 40.4 | 58.0 | 1.7 | -7.66 | 2.88 | 0.73 | 0.82 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 6J8G | 9781 | 2024-01-19 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.73 | 0.01 | 1.886 | 58.56 | 27.17 | 2.0 | 96.6 | 1.3 | 2.85 | 0.60 | 0.78 | 1.54 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 18.47 | 0.00 | 2.168 | 7.95 | 4.89 | 3.7 | 96.1 | 0.3 | 0.67 | 1.36 | 0.60 | 0.84 | 1.82 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8H | 9781 | 2024-01-19 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.72 | 0.01 | 1.886 | 58.60 | 27.17 | 2.0 | 96.6 | 1.3 | 2.87 | 0.60 | 0.78 | 1.53 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 18.52 | 0.00 | 2.179 | 7.78 | 6.06 | 4.1 | 95.7 | 0.2 | 0.70 | 1.35 | 0.60 | 0.83 | 1.95 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2024-01-17 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.82 | 0.0 | 0.04 | 17.81 | 0.00 | 2.186 | 15.94 | 5.11 | 6.7 | 92.7 | 0.5 | -1.39 | 2.36 | 0.75 | 0.84 | 2.66 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2024-01-17 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 17.77 | 0.00 | 2.236 | 10.82 | 4.58 | 7.8 | 91.7 | 0.6 | 0.72 | 1.59 | 0.73 | 0.86 | 3.06 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2024-01-19 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2024-01-18 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 26.19 | 0.02 | 1.290 | 18.78 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.005 | 0.80 | 0.0 | 0.04 | 23.53 | 0.01 | 1.807 | 30.19 | 0.00 | 8.8 | 90.8 | 0.4 | -1.51 | 0.90 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✔ | 8iZD | 35862 | 2024-01-18 | 2023-04-07 | 3.09 | 3.45 | 3.12 | 3.4 | 0.053 | 3.29 | 134.0 | 0.28 | 22.40 | 0.02 | 1.908 | 43.97 | 22.08 | 10.3 | 87.2 | 2.5 | -4.20 | 0.63 | 0.81 | 2.43 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 19.28 | 0.00 | 2.115 | 7.31 | 5.96 | 6.2 | 93.8 | 0.0 | 0.29 | 0.70 | 0.58 | 0.79 | 2.81 | 7806 | 894 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7CQK | 30442 | 2024-01-18 | 2020-08-11 | 3.3 | 3.38 | — | 3.3 | 0.011 | 1.34 | 3.0 | 0.08 | 19.32 | 0.01 | 0.963 | 29.97 | 21.66 | 11.3 | 87.7 | 1.0 | -5.35 | 0.70 | 0.84 | 2.60 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 17.38 | 0.00 | 2.249 | 6.16 | 4.48 | 5.4 | 94.5 | 0.1 | -1.09 | 1.66 | 0.72 | 0.87 | 2.27 | 8859 | 1116 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LMN | 4073 | 2024-01-17 | 2016-08-01 | 3.55 | 3.68 | 3.61 | 3.6 | 0.007 | 1.42 | 35.0 | 0.12 | 26.10 | 0.01 | 0.925 | 19.85 | 21.59 | 10.4 | 86.7 | 2.8 | -2.30 | 0.79 | 0.88 | 1.35 | 3.6 | 0.003 | 0.67 | 0.0 | 0.03 | 23.78 | 0.00 | 1.923 | 18.09 | 6.15 | 5.9 | 93.9 | 0.3 | -0.78 | 1.55 | 0.76 | 0.83 | 1.59 | 54149 | 2623 | 27 | 1534 | 129 | 0 | 0 | logfile |
✔ | 6VXo | 21446 | 2024-01-18 | 2020-02-22 | 3.5 | 3.81 | — | 3.8 | 0.012 | 1.40 | 0.0 | 0.05 | 24.97 | 0.00 | 2.125 | 14.64 | 21.57 | 12.2 | 87.4 | 0.4 | -3.90 | 0.63 | 0.83 | 0.88 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 19.26 | 0.00 | 2.113 | 8.21 | 7.97 | 10.2 | 89.8 | 0.0 | -0.09 | 0.66 | 0.61 | 0.81 | 0.53 | 8048 | 904 | 8 | 0 | 12 | 0 | 0 | logfile |