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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Z4K | 14500 | 2023-11-16 | 2022-03-04 | 3.81 | 4.83 | 3.89 | 3.9 | 0.003 | 0.44 | 0.0 | 0.03 | 14.82 | 0.00 | 2.200 | 9.44 | 0.99 | 2.4 | 97.6 | 0.0 | 1.12 | 0.85 | 0.75 | 0.54 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.90 | 0.00 | 2.150 | 21.37 | 0.08 | 4.5 | 95.5 | 0.0 | 0.01 | 2.37 | 0.88 | 0.80 | 0.73 | 14005 | 1360 | 4 | 138 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-11-13 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7WHi | 32500 | 2023-11-19 | 2021-12-30 | 2.93 | 2.59 | — | 3.1 | 0.004 | 0.64 | 0.0 | 0.05 | 10.96 | 0.02 | 2.213 | 7.54 | 5.48 | 5.5 | 94.3 | 0.2 | -3.55 | 0.77 | 0.75 | 2.17 | 3.0 | 0.003 | 0.76 | 0.0 | 0.05 | 14.79 | 0.00 | 2.146 | 11.16 | 3.60 | 6.4 | 93.5 | 0.0 | -1.35 | 0.71 | 0.80 | 0.81 | 2.34 | 28350 | 3578 | 10 | 0 | 36 | 0 | 0 | logfile |
✔ | 6C6U | 7351 | 2023-11-19 | 2018-01-19 | 3.7 | 3.83 | — | 3.8 | 0.008 | 1.04 | 0.0 | 0.06 | 12.40 | 0.01 | 2.073 | 5.28 | 0.29 | 7.8 | 92.0 | 0.1 | -4.18 | 0.74 | 0.82 | 2.49 | 3.8 | 0.005 | 0.70 | 0.0 | 0.04 | 15.97 | 0.00 | 1.927 | 9.75 | 0.43 | 7.1 | 92.9 | 0.0 | -0.74 | 2.25 | 0.74 | 0.82 | 1.63 | 26866 | 3273 | 11 | 61 | 3 | 0 | 0 | logfile |
✔ | 6U0N | 20608 | 2023-11-17 | 2019-08-14 | 3.5 | 3.79 | — | 3.6 | 0.008 | 0.91 | 0.0 | 0.06 | 14.29 | 0.01 | 2.242 | 6.72 | 0.56 | 9.6 | 90.3 | 0.1 | -5.29 | 0.79 | 0.83 | 2.15 | 3.6 | 0.005 | 0.72 | 0.0 | 0.05 | 15.54 | 0.00 | 2.119 | 13.01 | 0.61 | 9.2 | 90.8 | 0.0 | -2.94 | 1.18 | 0.79 | 0.83 | 2.01 | 19322 | 2489 | 23 | 0 | 43 | 0 | 0 | logfile |
✔ | 7LRD | 23495 | 2023-11-16 | 2021-02-16 | 3.22 | 4.04 | 3.18 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 7.70 | 0.00 | 1.795 | 4.48 | 0.25 | 1.3 | 98.7 | 0.0 | 2.71 | 0.82 | 0.76 | 2.88 | 3.2 | 0.004 | 0.52 | 0.0 | 0.04 | 10.53 | 0.00 | 2.010 | 7.20 | 0.13 | 2.0 | 98.0 | 0.1 | 2.44 | 1.19 | 0.90 | 0.88 | 2.64 | 14346 | 1766 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7ADP | 11733 | 2023-11-16 | 2020-09-15 | 3.6 | 4.19 | 3.66 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 15.28 | 0.00 | 1.915 | 7.97 | 0.12 | 1.8 | 98.2 | 0.0 | -4.91 | 0.76 | 0.79 | 1.62 | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 16.66 | 0.00 | 2.092 | 9.63 | 0.62 | 9.4 | 90.6 | 0.0 | -0.82 | 1.70 | 0.77 | 0.81 | 1.63 | 15026 | 1880 | 10 | 0 | 3 | 0 | 0 | logfile |
✔ | 6S6T | 10105 | 2023-11-14 | 2019-07-03 | 4.1 | 4.22 | 4.17 | 4.1 | 0.024 | 0.98 | 0.0 | 0.08 | 12.90 | 0.00 | 1.163 | 8.26 | 0.02 | 5.6 | 94.4 | 0.0 | -3.19 | 0.74 | 0.83 | — | 4.1 | 0.003 | 0.82 | 0.0 | 0.05 | 13.22 | 0.00 | 1.783 | 9.34 | 0.05 | 5.4 | 94.6 | 0.0 | -1.22 | 1.53 | 0.74 | 0.83 | — | 56543 | 7304 | 14 | 0 | 17 | 0 | 0 | logfile |
✔ | 7oiB | 12924 | 2023-11-20 | 2021-05-11 | 3.3 | 3.27 | — | 3.2 | 0.004 | 0.86 | 0.0 | 0.05 | 15.29 | 0.01 | 2.019 | 6.14 | 0.03 | 3.8 | 96.2 | 0.0 | -1.30 | 0.76 | 0.81 | 2.48 | 3.2 | 0.007 | 0.72 | 0.0 | 0.04 | 16.73 | 0.01 | 1.754 | 12.62 | 0.58 | 4.7 | 95.3 | 0.0 | -0.23 | 1.20 | 0.79 | 0.87 | 2.40 | 88360 | 7838 | 56 | 1148 | 51 | 0 | 0 | logfile |
✔ | 7TGY | 25889 | 2023-11-19 | 2022-01-09 | 3.0 | 3.76 | — | 3.5 | 0.010 | 0.87 | 0.0 | 0.06 | 12.59 | 0.01 | 1.886 | 9.61 | 0.18 | 7.8 | 92.1 | 0.0 | -2.50 | 0.86 | 0.87 | 3.21 | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 14.18 | 0.00 | 2.171 | 5.46 | 1.13 | 5.7 | 94.3 | 0.0 | -0.73 | 1.04 | 0.85 | 0.88 | 2.62 | 25999 | 3254 | 15 | 0 | 42 | 0 | 0 | logfile |
✔ | 7EB2 | 31049 | 2023-11-17 | 2021-03-08 | 3.5 | 3.43 | — | 3.4 | 0.007 | 0.76 | 0.0 | 0.11 | 11.75 | 0.00 | 2.092 | 7.56 | 0.00 | 3.6 | 96.4 | 0.0 | -1.24 | 0.79 | 0.74 | 1.53 | 3.4 | 0.004 | 0.98 | 0.0 | 0.06 | 15.51 | 0.00 | 2.089 | 17.01 | 0.84 | 3.5 | 96.4 | 0.0 | -0.30 | 1.08 | 0.81 | 0.76 | 1.17 | 18497 | 2337 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WTD | 32779 | 2023-11-19 | 2022-02-04 | 3.9 | 5.03 | — | 4.3 | 0.023 | 1.20 | 1.0 | 0.05 | 15.55 | 0.01 | 0.990 | 21.59 | 1.15 | 7.3 | 92.6 | 0.1 | -0.88 | 0.81 | 0.61 | 0.10 | 4.4 | 0.004 | 0.94 | 1.0 | 0.05 | 16.56 | 0.01 | 2.083 | 25.45 | 0.42 | 8.2 | 91.8 | 0.1 | -1.39 | 4.65 | 0.85 | 0.72 | 0.20 | 27137 | 3491 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 8DK1 | 27480 | 2023-11-17 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 12.85 | 0.00 | 2.260 | 3.98 | 1.49 | 3.6 | 96.4 | 0.0 | 2.59 | 0.62 | 0.85 | 0.90 | 2.22 | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VJA | 21212 | 2023-11-14 | 2020-01-15 | 3.3 | 3.74 | 3.48 | 3.6 | 0.014 | 1.27 | 0.0 | 0.08 | 12.51 | 0.01 | 2.193 | 4.71 | 0.49 | 4.2 | 95.7 | 0.1 | 0.64 | 0.61 | 0.80 | 2.94 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 15.21 | 0.00 | 2.155 | 6.90 | 0.29 | 3.7 | 96.3 | 0.0 | 1.29 | 1.28 | 0.61 | 0.80 | 2.46 | 9342 | 1204 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 7V8B | 31796 | 2023-11-14 | 2021-08-22 | 3.2 | 3.85 | — | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.74 | 0.00 | 2.308 | 6.16 | 0.00 | 5.0 | 94.8 | 0.1 | -0.34 | 0.79 | 0.85 | 2.31 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 16.25 | 0.00 | 2.142 | 5.16 | 0.43 | 5.0 | 94.8 | 0.1 | 0.28 | 1.16 | 0.79 | 0.88 | 2.22 | 6650 | 797 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 7B1B | 11982 | 2023-11-15 | 2020-11-24 | 4.23 | 6.70 | 4.32 | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 14.14 | 0.01 | 2.087 | 33.07 | 0.54 | 13.6 | 86.4 | 0.0 | -2.84 | 0.88 | 0.83 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.04 | 12.18 | 0.00 | 2.035 | 31.45 | 0.00 | 13.7 | 86.2 | 0.1 | -2.93 | 0.92 | 0.88 | 0.83 | — | 12870 | 1697 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 7YG8 | 33811 | 2023-11-14 | 2022-07-11 | 2.97 | 3.59 | 3.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 14.91 | 0.00 | 2.042 | 13.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.82 | — | 3.0 | 0.006 | 0.65 | 0.0 | 0.04 | 16.08 | 0.00 | 1.846 | 19.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.91 | 0.89 | — | 8440 | 0 | 3 | 395 | 5 | 0 | 0 | logfile |
✔ | 7AST | 11904 | 2023-11-21 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.5 | 0.016 | 0.95 | 0.0 | 0.05 | 17.52 | 0.01 | 2.125 | 25.76 | 0.29 | 16.7 | 83.0 | 0.3 | -3.63 | 1.41 | 0.64 | 0.50 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 7TGX | 25888 | 2023-11-19 | 2022-01-09 | 3.2 | 3.90 | — | 3.6 | 0.005 | 0.68 | 0.0 | 0.05 | 13.59 | 0.00 | 1.948 | 7.60 | 0.25 | 6.6 | 93.4 | 0.0 | -2.14 | 0.85 | 0.86 | 3.04 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.77 | 0.00 | 2.154 | 5.21 | 0.14 | 4.5 | 95.5 | 0.0 | -0.54 | 0.41 | 0.85 | 0.88 | 2.36 | 25778 | 3244 | 10 | 0 | 32 | 0 | 0 | logfile |
✔ | 7XU1 | 33455 | 2023-11-13 | 2022-05-18 | 3.0 | 3.16 | 3.23 | 3.1 | 0.012 | 0.88 | 1.0 | 0.07 | 13.63 | 0.01 | 2.068 | 2.28 | 0.24 | 3.9 | 96.1 | 0.0 | -0.92 | 0.81 | 0.82 | 3.49 | 3.1 | 0.003 | 0.52 | 1.0 | 0.05 | 14.65 | 0.00 | 1.988 | 4.49 | 0.52 | 4.0 | 96.0 | 0.0 | -0.57 | 0.35 | 0.83 | 0.85 | 3.33 | 52082 | 3309 | 19 | 0 | 69 | 0 | 25165 | logfile |