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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oH9 | 12897 | 2023-11-16 | 2021-05-09 | 3.0 | 3.38 | — | 3.0 | 0.007 | 0.84 | 0.0 | 0.05 | 26.08 | 0.01 | 2.234 | 5.13 | 0.00 | 2.7 | 97.3 | 0.0 | -0.54 | 0.89 | 0.87 | 2.74 | 3.0 | 0.004 | 0.73 | 0.0 | 0.04 | 27.22 | 0.00 | 2.089 | 12.71 | 1.64 | 3.3 | 96.7 | 0.0 | 1.30 | 1.15 | 0.90 | 0.89 | 2.76 | 15099 | 1144 | 13 | 290 | 0 | 0 | 0 | logfile |
✔ | 6PM2 | 20384 | 2023-11-16 | 2019-07-01 | 3.0 | 3.52 | — | 3.4 | 0.004 | 0.95 | 0.0 | 0.05 | 9.08 | 0.01 | 2.330 | 4.47 | 0.00 | 4.3 | 95.7 | 0.0 | -5.02 | 0.59 | 0.82 | 4.42 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.84 | 0.00 | 2.145 | 9.84 | 2.89 | 4.5 | 95.5 | 0.0 | -0.96 | 1.08 | 0.59 | 0.84 | 3.69 | 14125 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6QD2 | 4517 | 2023-11-18 | 2018-12-31 | 4.8 | 4.92 | 5.85 | 4.9 | 0.006 | 0.86 | 0.0 | 0.04 | 9.04 | 0.01 | 2.025 | 6.53 | 0.00 | 11.6 | 88.4 | 0.0 | -4.60 | 0.35 | 0.62 | — | 4.9 | 0.004 | 0.68 | 0.0 | 0.04 | 10.92 | 0.00 | 2.087 | 11.59 | 0.00 | 9.1 | 90.9 | 0.0 | -1.48 | 1.09 | 0.39 | 0.65 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✔ | 7P2Q | 13172 | 2023-11-13 | 2021-07-06 | 4.9 | 4.54 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 8.76 | 0.01 | 2.264 | 4.17 | 0.00 | 5.0 | 95.0 | 0.0 | -3.09 | 0.77 | 0.72 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 12.28 | 0.00 | 2.213 | 12.52 | 0.00 | 4.1 | 95.9 | 0.0 | -0.27 | 1.68 | 0.80 | 0.75 | — | 4780 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2023-11-14 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.005 | 0.67 | 0.0 | 0.05 | 18.05 | 0.00 | 2.039 | 11.35 | 1.28 | 0.4 | 99.6 | 0.0 | -0.79 | 1.07 | 0.79 | 0.83 | 2.94 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 6RTC | 4997 | 2023-11-17 | 2019-05-23 | 3.96 | 4.05 | 3.97 | 4.0 | 0.007 | 0.91 | 0.0 | 0.05 | 14.96 | 0.01 | 2.295 | 1.19 | 0.00 | 3.9 | 96.1 | 0.0 | -3.83 | 0.68 | 0.80 | 1.58 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.05 | 0.00 | 2.258 | 6.35 | 0.38 | 5.4 | 94.6 | 0.0 | 0.85 | 0.62 | 0.69 | 0.81 | 1.74 | 19374 | 1242 | 2 | 0 | 0 | 0 | 9804 | logfile |
✔ | 5V4S | 8632 | 2023-11-15 | 2017-03-10 | 4.2 | 4.02 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.58 | 0.73 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.67 | 0.00 | 2.165 | 4.59 | 0.00 | 2.4 | 97.6 | 0.0 | 3.09 | 1.04 | 0.57 | 0.72 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FA1 | 28947 | 2023-11-13 | 2022-11-25 | 2.51 | 2.37 | 2.87 | 2.7 | 0.006 | 0.57 | 0.0 | 0.04 | 15.92 | 0.00 | 2.286 | 8.14 | 0.00 | 4.6 | 95.4 | 0.0 | 0.73 | 0.77 | 0.80 | 1.71 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 16.30 | 0.00 | 2.354 | 8.14 | 1.68 | 0.3 | 99.7 | 0.0 | 4.83 | 0.85 | 0.77 | 0.79 | 1.59 | 2553 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X12 | 21986 | 2023-11-13 | 2020-05-18 | 3.52 | 3.69 | — | 3.7 | 0.008 | 1.08 | 0.0 | 0.06 | 15.87 | 0.01 | 2.322 | 3.01 | 0.00 | 2.7 | 97.3 | 0.0 | -5.29 | 0.65 | 0.84 | 1.43 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.88 | 0.00 | 2.262 | 7.77 | 0.63 | 2.7 | 97.3 | 0.0 | 0.14 | 1.20 | 0.66 | 0.84 | 1.26 | 3059 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7M3F | 23653 | 2023-11-15 | 2021-03-18 | 2.8 | 2.45 | — | 2.7 | 0.008 | 1.01 | 0.0 | 0.06 | 12.33 | 0.01 | 2.245 | 2.64 | 0.00 | 5.0 | 95.0 | 0.0 | -2.56 | 0.84 | 0.86 | 4.26 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 14.96 | 0.00 | 2.124 | 4.04 | 1.24 | 3.7 | 96.2 | 0.1 | -0.33 | 0.40 | 0.84 | 0.87 | 3.36 | 13084 | 1631 | 7 | 0 | 23 | 0 | 0 | logfile |
✔ | 6QCY | 4513 | 2023-11-18 | 2018-12-31 | 4.7 | 4.78 | 5.41 | 4.7 | 0.009 | 1.05 | 0.0 | 0.05 | 9.70 | 0.01 | 2.012 | 8.28 | 0.00 | 14.0 | 86.0 | 0.0 | -4.43 | 0.50 | 0.63 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 10.61 | 0.00 | 1.943 | 9.84 | 0.00 | 6.7 | 93.3 | 0.0 | -2.05 | 2.16 | 0.49 | 0.64 | — | 21746 | 1420 | 6 | 0 | 2 | 0 | 11100 | logfile |
✔ | 6UWF | 20922 | 2023-11-13 | 2019-11-05 | 3.08 | 3.26 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.05 | 16.40 | 0.01 | 2.294 | 2.14 | 0.00 | 3.1 | 96.9 | 0.0 | -3.86 | 0.70 | 0.85 | 2.48 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.31 | 0.00 | 2.245 | 6.57 | 0.62 | 3.1 | 96.9 | 0.0 | 1.17 | 1.10 | 0.67 | 0.85 | 2.62 | 3178 | 417 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2023-11-19 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.90 | 0.00 | 1.877 | 10.11 | 0.21 | 8.1 | 91.9 | 0.0 | -1.12 | 1.52 | 0.66 | 0.79 | 2.07 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 6Y5K | 10700 | 2023-11-15 | 2020-02-25 | 4.2 | 4.47 | 4.20 | 4.2 | 0.004 | 0.76 | 0.0 | 0.05 | 12.98 | 0.00 | 2.096 | 10.42 | 0.00 | 2.6 | 97.4 | 0.0 | -1.98 | 0.86 | 0.76 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.88 | 0.00 | 2.113 | 15.93 | 0.00 | 3.1 | 96.9 | 0.0 | 0.21 | 1.01 | 0.87 | 0.79 | — | 10614 | 1335 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 7TT4 | 26110 | 2023-11-17 | 2022-01-31 | 4.2 | 4.40 | — | 4.3 | 0.005 | 0.77 | 0.0 | 0.05 | 10.61 | 0.00 | 2.051 | 2.23 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.72 | 0.76 | — | 4.3 | 0.003 | 0.60 | 0.0 | 0.04 | 13.09 | 0.00 | 1.984 | 7.22 | 0.00 | 3.1 | 96.9 | 0.0 | 0.14 | 2.40 | 0.71 | 0.76 | — | 20633 | 1346 | 6 | 0 | 0 | 0 | 10107 | logfile |
✔ | 7MPE | 23932 | 2023-11-15 | 2021-05-04 | 3.2 | 3.91 | — | 3.8 | 0.005 | 0.69 | 0.0 | 0.04 | 14.10 | 0.00 | 2.174 | 14.62 | 0.00 | 6.9 | 93.1 | 0.0 | -2.52 | 0.62 | 0.77 | 2.09 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.96 | 0.00 | 2.092 | 11.91 | 0.41 | 5.5 | 94.5 | 0.0 | -0.53 | 1.11 | 0.61 | 0.76 | 1.30 | 11214 | 1428 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D64 | 27216 | 2023-11-15 | 2022-06-06 | 3.14 | 3.25 | 3.11 | 3.2 | 0.007 | 0.81 | 0.0 | 0.06 | 13.69 | 0.01 | 2.275 | 7.13 | 0.00 | 6.6 | 93.4 | 0.0 | -3.61 | 0.72 | 0.84 | 3.27 | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 15.07 | 0.00 | 2.198 | 6.33 | 0.58 | 6.2 | 93.8 | 0.0 | -0.53 | 0.37 | 0.73 | 0.87 | 3.23 | 12545 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WYJ | 21966 | 2023-11-13 | 2020-05-13 | 3.7 | 3.74 | — | 3.8 | 0.010 | 0.64 | 0.0 | 0.05 | 12.33 | 0.00 | 2.268 | 5.08 | 0.00 | 5.3 | 94.7 | 0.0 | -4.80 | 0.59 | 0.78 | 4.37 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.52 | 0.00 | 2.333 | 5.74 | 0.00 | 1.8 | 98.2 | 0.0 | 2.16 | 0.60 | 0.63 | 0.80 | 1.47 | 2949 | 398 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PT0 | 20470 | 2023-11-15 | 2019-07-14 | 3.2 | 3.63 | — | 3.5 | 0.006 | 0.89 | 0.0 | 0.06 | 9.77 | 0.01 | 2.222 | 5.12 | 0.00 | 2.8 | 97.2 | 0.0 | -2.48 | 0.67 | 0.75 | 1.99 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.16 | 0.00 | 2.138 | 13.11 | 0.00 | 3.1 | 96.9 | 0.0 | 0.37 | 1.69 | 0.70 | 0.81 | 1.85 | 10232 | 1284 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 6KA4 | 9954 | 2023-11-17 | 2019-06-20 | 3.4 | 3.49 | — | 3.4 | 0.006 | 0.82 | 0.0 | 0.05 | 13.68 | 0.01 | 2.076 | 15.29 | 0.00 | 5.0 | 95.0 | 0.0 | -0.10 | 0.77 | 0.83 | 1.80 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.91 | 0.00 | 2.155 | 8.57 | 0.15 | 3.6 | 96.4 | 0.0 | 1.28 | 0.49 | 0.79 | 0.85 | 1.21 | 17500 | 2136 | 4 | 0 | 0 | 0 | 0 | logfile |