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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o3T | 3743 | 2023-11-15 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 14.44 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 13.08 | 0.00 | 2.112 | 11.27 | 0.00 | 12.0 | 88.0 | 0.0 | -4.99 | 1.54 | 0.52 | 0.73 | 3.04 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 7NCJ | 12268 | 2023-11-15 | 2021-01-28 | 4.23 | 3.11 | 3.97 | 4.5 | 0.011 | 1.60 | 2.0 | 0.10 | 13.68 | 0.01 | 2.444 | 0.18 | 0.76 | 7.7 | 92.0 | 0.3 | -2.36 | 0.65 | 0.46 | — | 4.5 | 0.003 | 0.60 | 1.0 | 0.05 | 13.98 | 0.00 | 1.897 | 13.84 | 0.00 | 11.2 | 88.8 | 0.0 | -2.88 | 1.39 | 0.69 | 0.58 | — | 10860 | 774 | 12 | 0 | 0 | 0 | 5586 | logfile |
✔ | 7Q3U | 13795 | 2023-11-13 | 2021-10-28 | 3.7 | 3.43 | 3.48 | 4.1 | 0.005 | 1.17 | 0.0 | 0.05 | 16.84 | 0.01 | 2.120 | 36.48 | 0.00 | 10.7 | 89.3 | 0.0 | -5.79 | 0.23 | 0.47 | 0.88 | 4.0 | 0.004 | 0.92 | 0.0 | 0.04 | 18.42 | 0.01 | 2.192 | 28.03 | 0.00 | 14.8 | 85.2 | 0.0 | -6.03 | 2.22 | 0.34 | 0.60 | 2.69 | 2355 | 355 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AUR | 15673 | 2023-11-13 | 2022-08-25 | 3.47 | 3.44 | 3.63 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.41 | 0.00 | 2.350 | 6.62 | 0.00 | 5.6 | 94.4 | 0.0 | -1.30 | 0.72 | 0.82 | 2.41 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.233 | 7.09 | 0.00 | 9.4 | 90.5 | 0.1 | -1.38 | 1.66 | 0.71 | 0.83 | 2.56 | 5409 | 699 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCH | 12266 | 2023-11-15 | 2021-01-28 | 3.84 | 3.76 | 3.69 | 3.8 | 0.013 | 1.61 | 2.0 | 0.10 | 14.68 | 0.00 | 2.485 | 0.00 | 0.19 | 9.4 | 90.6 | 0.0 | -3.70 | 0.60 | 0.45 | 2.36 | 3.8 | 0.003 | 0.70 | 2.0 | 0.05 | 15.63 | 0.00 | 1.978 | 9.23 | 0.00 | 11.2 | 88.8 | 0.0 | -4.13 | 1.66 | 0.64 | 0.52 | 2.25 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 6H66 | 0145 | 2023-11-14 | 2018-07-26 | 4.16 | 4.23 | 3.99 | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 9.41 | 0.01 | 2.070 | 15.41 | 0.17 | 10.4 | 89.4 | 0.2 | -3.09 | 0.61 | 0.76 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 12.04 | 0.00 | 2.009 | 24.15 | 0.00 | 8.3 | 91.7 | 0.0 | 0.14 | 1.87 | 0.62 | 0.78 | — | 10017 | 667 | 4 | 30 | 1 | 0 | 4120 | logfile |
✔ | 6H61 | 0143 | 2023-11-14 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 9.67 | 0.00 | 2.107 | 14.74 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 11.87 | 0.00 | 2.005 | 26.70 | 0.00 | 9.8 | 90.2 | 0.0 | 0.17 | 1.84 | 0.63 | 0.78 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |
✔ | 7K20 | 22638 | 2023-11-15 | 2020-09-08 | 3.2 | 3.37 | — | 3.2 | 0.013 | 1.02 | 0.0 | 0.06 | 10.52 | 0.01 | 2.141 | 3.41 | 0.00 | 4.5 | 95.5 | 0.0 | -5.12 | 0.72 | 0.87 | 4.12 | 3.2 | 0.005 | 0.62 | 0.0 | 0.05 | 13.11 | 0.00 | 1.893 | 7.47 | 0.00 | 3.3 | 96.7 | 0.0 | -0.69 | 1.12 | 0.73 | 0.89 | 3.14 | 11828 | 1488 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7F29 | 31428 | 2023-11-13 | 2021-06-10 | 3.1 | 3.08 | — | 3.2 | 0.014 | 1.07 | 0.0 | 0.06 | 15.69 | 0.00 | 2.305 | 11.88 | 0.00 | 14.3 | 85.7 | 0.0 | -3.96 | 0.42 | 0.83 | 5.02 | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 17.49 | 0.00 | 2.340 | 5.10 | 0.00 | 12.9 | 87.1 | 0.0 | -2.13 | 1.15 | 0.42 | 0.83 | 4.62 | 1794 | 222 | 18 | 0 | 18 | 0 | 0 | logfile |
✔ | 7NB8 | 12257 | 2023-11-17 | 2021-01-25 | 4.4 | 4.42 | — | 4.2 | 0.018 | 1.79 | 1.0 | 0.09 | 11.88 | 0.01 | 1.811 | 2.04 | 0.10 | 2.8 | 96.8 | 0.3 | 0.01 | 0.85 | 0.67 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 13.48 | 0.00 | 1.758 | 12.21 | 0.00 | 5.1 | 94.8 | 0.1 | -0.22 | 2.09 | 0.90 | 0.79 | — | 18570 | 1177 | 5 | 0 | 4 | 0 | 9185 | logfile |
✔ | 6N9Y | 0383 | 2023-11-13 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 4.80 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.57 | 0.00 | 2.156 | 13.06 | 0.00 | 7.8 | 92.2 | 0.0 | -0.84 | 1.77 | 0.40 | 0.79 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PMG | 13532 | 2023-11-15 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.18 | 2.0 | 0.07 | 15.15 | 0.01 | 1.308 | 4.64 | 0.09 | 0.2 | 99.8 | 0.0 | -1.37 | 0.92 | 0.85 | 3.45 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.26 | 0.00 | 1.982 | 6.27 | 0.00 | 1.4 | 98.6 | 0.0 | 1.72 | 1.26 | 0.94 | 0.89 | 2.87 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PLT | 13501 | 2023-11-15 | 2021-09-01 | 3.3 | 3.94 | 3.24 | 3.4 | 0.014 | 1.15 | 1.0 | 0.07 | 14.56 | 0.01 | 1.312 | 4.16 | 0.00 | 0.2 | 99.8 | 0.0 | -1.61 | 0.92 | 0.87 | 3.10 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.46 | 0.00 | 2.028 | 7.78 | 0.00 | 1.1 | 98.9 | 0.0 | 1.62 | 0.64 | 0.91 | 0.88 | 2.22 | 10148 | 1264 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Roi | 24597 | 2023-11-20 | 2021-07-30 | 4.3 | 4.43 | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.05 | 12.41 | 0.01 | 2.400 | 9.73 | 1.33 | 4.3 | 95.7 | 0.0 | 1.63 | 0.67 | 0.85 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 11.38 | 0.01 | 2.186 | 11.55 | 0.00 | 4.3 | 95.7 | 0.0 | 2.65 | 0.64 | 0.67 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PMH | 13533 | 2023-11-15 | 2021-09-02 | 3.4 | 4.28 | 3.26 | 3.3 | 0.009 | 1.01 | 2.0 | 0.06 | 14.97 | 0.01 | 1.310 | 4.17 | 0.09 | 0.2 | 99.8 | 0.0 | -1.51 | 0.91 | 0.83 | 3.35 | 3.3 | 0.002 | 0.63 | 0.0 | 0.04 | 15.46 | 0.00 | 2.076 | 7.04 | 0.00 | 1.2 | 98.8 | 0.0 | 1.79 | 1.28 | 0.94 | 0.88 | 2.75 | 10154 | 1259 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMB | 13527 | 2023-11-15 | 2021-09-02 | 3.6 | 4.10 | 3.61 | 3.6 | 0.006 | 0.93 | 1.0 | 0.06 | 15.72 | 0.01 | 1.317 | 6.47 | 0.09 | 0.2 | 99.8 | 0.0 | -1.25 | 0.90 | 0.83 | 2.52 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.45 | 0.00 | 1.955 | 8.91 | 0.00 | 2.1 | 97.9 | 0.0 | 1.39 | 1.32 | 0.90 | 0.85 | 2.19 | 10113 | 1255 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7M65 | 23689 | 2023-11-13 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.050 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.004 | 0.87 | 0.0 | 0.05 | 11.68 | 0.00 | 2.156 | 22.17 | 0.00 | 16.1 | 83.9 | 0.0 | -6.30 | 4.44 | 0.51 | 0.72 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PLW | 13504 | 2023-11-15 | 2021-09-01 | 3.5 | 4.05 | 3.55 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 15.08 | 0.01 | 1.323 | 4.81 | 0.00 | 0.2 | 99.8 | 0.0 | -1.69 | 0.91 | 0.83 | 3.00 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.73 | 0.00 | 1.996 | 8.33 | 0.00 | 1.6 | 98.4 | 0.0 | 1.19 | 1.31 | 0.91 | 0.85 | 2.30 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 8BFB | 16019 | 2023-11-13 | 2022-10-24 | 3.2 | 3.13 | 3.01 | 3.2 | 0.003 | 0.44 | 0.0 | 0.06 | 13.91 | 0.00 | 2.552 | 9.16 | 0.00 | 0.0 | 100.0 | 0.0 | -3.20 | 0.49 | 0.83 | 5.20 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 17.53 | 0.00 | 2.364 | 6.10 | 0.00 | 2.8 | 97.2 | 0.0 | -3.12 | 1.03 | 0.52 | 0.86 | 7.13 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iZV | 9758 | 2023-11-13 | 2018-12-20 | 4.2 | 4.27 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 10.55 | 0.01 | 2.170 | 5.77 | 0.00 | 4.9 | 95.1 | 0.0 | -3.60 | 0.68 | 0.81 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 12.56 | 0.00 | 1.962 | 14.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.84 | 1.01 | 0.70 | 0.82 | — | 5624 | 698 | 4 | 0 | 4 | 0 | 0 | logfile |