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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HC6 | 34653 | 2023-11-14 | 2022-11-01 | 4.69 | 5.06 | 4.63 | 4.8 | 0.003 | 0.57 | 0.0 | 0.05 | 13.45 | 0.00 | 2.296 | 4.88 | 0.12 | 4.6 | 95.4 | 0.0 | -0.78 | 0.80 | 0.70 | — | 4.8 | 0.003 | 0.62 | 0.0 | 0.04 | 13.41 | 0.00 | 2.175 | 16.76 | 0.00 | 6.9 | 93.1 | 0.0 | -1.56 | 0.77 | 0.82 | 0.75 | — | 7377 | 933 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6TZ0 | 20585 | 2023-11-16 | 2019-08-09 | 2.8 | 2.86 | — | 2.8 | 0.006 | 0.94 | 1.0 | 0.06 | 10.04 | 0.01 | 2.298 | 3.74 | 0.54 | 3.9 | 96.1 | 0.0 | -3.29 | 0.54 | 0.84 | 4.34 | 2.8 | 0.003 | 0.60 | 0.0 | 0.04 | 15.63 | 0.00 | 2.164 | 6.46 | 2.02 | 3.6 | 96.4 | 0.0 | 0.40 | 1.31 | 0.55 | 0.87 | 3.20 | 13674 | 1709 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FUU | 3308 | 2023-11-17 | 2016-01-29 | 4.19 | 4.30 | — | 4.2 | 0.014 | 1.86 | 3.0 | 0.12 | 11.14 | 0.02 | 1.862 | 17.37 | 1.20 | 6.2 | 92.2 | 1.7 | -2.38 | 0.69 | 0.72 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.05 | 13.02 | 0.00 | 2.160 | 14.08 | 0.05 | 6.9 | 92.6 | 0.6 | -1.30 | 0.96 | 0.77 | 0.83 | — | 20735 | 2281 | 70 | 0 | 213 | 0 | 0 | logfile |
✔ | 7RXB | 24727 | 2023-11-14 | 2021-08-22 | 3.07 | 3.22 | — | 3.2 | 0.009 | 1.15 | 0.0 | 0.05 | 14.60 | 0.01 | 2.437 | 0.72 | 0.00 | 6.0 | 94.0 | 0.0 | -4.88 | 0.67 | 0.89 | 3.48 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.48 | 0.00 | 2.379 | 1.98 | 0.00 | 5.2 | 94.8 | 0.0 | -0.20 | 0.26 | 0.63 | 0.88 | 3.17 | 8506 | 1096 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7EJU | 31163 | 2023-11-16 | 2021-04-02 | 3.5 | 3.64 | — | 3.6 | 0.009 | 1.29 | 0.0 | 0.07 | 11.94 | 0.01 | 2.257 | 4.79 | 1.15 | 17.0 | 82.8 | 0.2 | -5.48 | 0.72 | 0.79 | 3.13 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 15.00 | 0.00 | 2.097 | 10.05 | 0.26 | 12.9 | 87.1 | 0.0 | -2.79 | 0.84 | 0.70 | 0.79 | 2.28 | 13713 | 1700 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 8DL0 | 27494 | 2023-11-17 | 2022-07-06 | 4.1 | 4.31 | 4.17 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.22 | 0.00 | 2.168 | 13.34 | 0.00 | 4.1 | 95.9 | 0.0 | 0.25 | 0.73 | 0.75 | — | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 13.76 | 0.00 | 2.076 | 15.95 | 0.00 | 4.5 | 95.5 | 0.0 | 0.02 | 1.63 | 0.73 | 0.76 | — | 10377 | 1268 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CH9 | 30372 | 2023-11-16 | 2020-07-05 | 3.5 | 3.92 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 18.11 | 0.00 | 2.032 | 18.63 | 10.34 | 9.6 | 90.4 | 0.0 | -4.56 | 0.69 | 0.78 | 0.63 | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 17.20 | 0.00 | 2.096 | 19.16 | 1.14 | 9.0 | 91.0 | 0.0 | -1.99 | 0.80 | 0.68 | 0.77 | 0.75 | 15978 | 2126 | 19 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T37 | 25650 | 2023-11-17 | 2021-12-07 | 3.7 | 4.02 | — | 4.0 | 0.007 | 0.85 | 0.0 | 0.05 | 13.07 | 0.01 | 2.247 | 4.17 | 0.00 | 3.8 | 96.2 | 0.0 | -1.43 | 0.69 | 0.82 | 2.15 | 4.0 | 0.005 | 0.60 | 0.0 | 0.04 | 14.32 | 0.00 | 2.266 | 7.06 | 0.00 | 4.4 | 95.6 | 0.0 | 0.85 | 0.30 | 0.69 | 0.83 | 2.03 | 20176 | 2476 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 3JD2 | 6635 | 2023-11-18 | 2016-03-28 | 3.3 | 2.95 | — | 2.9 | 0.011 | 1.04 | 0.0 | 0.06 | 8.84 | 0.01 | 2.219 | 10.21 | 0.72 | 5.6 | 93.6 | 0.8 | -5.54 | 0.80 | 0.83 | 3.54 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.29 | 0.00 | 2.187 | 9.17 | 0.44 | 4.1 | 95.9 | 0.0 | 0.18 | 1.19 | 0.81 | 0.87 | 2.36 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7TEB | 25844 | 2023-11-19 | 2022-01-04 | 4.23 | 5.48 | 4.24 | 3.5 | 0.006 | 1.41 | 6.0 | 0.07 | 16.52 | 0.01 | 1.373 | 15.69 | 3.86 | 11.7 | 86.6 | 1.7 | -4.64 | 0.78 | 0.68 | — | 3.3 | 0.004 | 0.82 | 0.0 | 0.05 | 13.91 | 0.00 | 2.154 | 20.45 | 0.00 | 11.8 | 88.0 | 0.1 | -1.63 | 1.56 | 0.83 | 0.81 | — | 28161 | 3580 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T6Q | 25724 | 2023-11-17 | 2021-12-14 | 3.4 | 3.68 | — | 3.7 | 0.006 | 1.29 | 2.0 | 0.06 | 15.17 | 0.01 | 2.282 | 4.99 | 0.00 | 3.9 | 96.1 | 0.0 | -3.87 | 0.68 | 0.77 | 2.18 | 3.7 | 0.004 | 0.71 | 0.0 | 0.04 | 16.52 | 0.00 | 2.202 | 11.98 | 0.33 | 4.4 | 95.6 | 0.0 | -0.22 | 0.51 | 0.71 | 0.82 | 2.26 | 19600 | 2424 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GT6 | 34245 | 2023-11-13 | 2022-09-07 | 3.47 | 3.69 | 3.52 | 3.6 | 0.010 | 1.53 | 0.0 | 0.06 | 17.48 | 0.01 | 2.322 | 9.92 | 0.77 | 5.1 | 94.9 | 0.0 | -4.60 | 0.63 | 0.82 | 2.34 | 3.6 | 0.003 | 0.82 | 0.0 | 0.04 | 17.65 | 0.00 | 2.269 | 7.77 | 0.58 | 4.2 | 95.8 | 0.0 | -0.06 | 0.70 | 0.63 | 0.82 | 1.54 | 4922 | 618 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6TZ1 | 20586 | 2023-11-16 | 2019-08-09 | 3.4 | 3.44 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.05 | 10.34 | 0.01 | 2.207 | 4.35 | 0.47 | 5.1 | 94.9 | 0.0 | -3.92 | 0.54 | 0.85 | 3.95 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 14.56 | 0.00 | 0.990 | 6.95 | 0.54 | 4.2 | 95.8 | 0.0 | -0.48 | 1.24 | 0.53 | 0.88 | 3.22 | 14212 | 1709 | 5 | 23 | 1 | 0 | 0 | logfile |
✔ | 7S8X | 24928 | 2023-11-15 | 2021-09-20 | 3.3 | 3.00 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.05 | 14.05 | 0.00 | 2.237 | 11.81 | 0.00 | 6.6 | 93.3 | 0.1 | 0.01 | 0.64 | 0.83 | 2.58 | 3.3 | 0.005 | 0.64 | 0.0 | 0.05 | 15.57 | 0.00 | 2.147 | 10.77 | 0.96 | 6.3 | 93.7 | 0.0 | 0.94 | 1.16 | 0.66 | 0.86 | 2.32 | 10426 | 1350 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HC8 | 34655 | 2023-11-13 | 2022-11-01 | 3.95 | 4.00 | 3.84 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.65 | 0.01 | 2.317 | 5.70 | 0.56 | 4.2 | 95.8 | 0.0 | -1.17 | 0.64 | 0.70 | 0.79 | 4.0 | 0.005 | 0.70 | 0.0 | 0.04 | 16.47 | 0.00 | 2.129 | 12.78 | 0.37 | 6.3 | 93.7 | 0.0 | -1.61 | 0.58 | 0.69 | 0.78 | 1.60 | 4832 | 628 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7B5E | 12027 | 2023-11-15 | 2020-12-03 | 4.1 | 4.24 | 4.07 | 4.1 | 0.006 | 0.93 | 0.0 | 0.06 | 15.02 | 0.01 | 2.275 | 9.22 | 0.31 | 8.1 | 91.9 | 0.0 | -3.56 | 0.65 | 0.76 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 14.42 | 0.00 | 2.193 | 14.31 | 0.00 | 6.7 | 93.3 | 0.0 | -0.14 | 0.68 | 0.64 | 0.76 | — | 11764 | 1436 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6BPQ | 7127 | 2023-11-18 | 2017-11-25 | 4.1 | 4.26 | 4.18 | 4.2 | 0.007 | 0.92 | 0.0 | 0.05 | 9.83 | 0.01 | 2.338 | 4.30 | 0.00 | 3.9 | 96.1 | 0.0 | -3.30 | 0.68 | 0.78 | — | 4.2 | 0.004 | 0.61 | 0.0 | 0.04 | 11.72 | 0.00 | 2.253 | 8.23 | 0.00 | 5.2 | 94.8 | 0.0 | 1.55 | 0.63 | 0.68 | 0.78 | — | 22404 | 3072 | 4 | 0 | 268 | 0 | 0 | logfile |
✔ | 7XG4 | 33185 | 2023-11-20 | 2022-04-02 | 3.7 | 3.39 | 3.84 | 3.1 | 0.011 | 1.24 | 0.0 | 0.07 | 19.39 | 0.01 | 1.187 | 37.77 | 1.33 | 3.8 | 96.1 | 0.1 | -1.82 | 0.78 | 0.64 | 0.83 | 3.1 | 0.004 | 0.77 | 0.0 | 0.04 | 19.80 | 0.00 | 2.004 | 23.37 | 0.60 | 5.2 | 94.8 | 0.0 | -0.77 | 0.64 | 0.79 | 0.66 | 0.67 | 24769 | 2876 | 13 | 134 | 1 | 0 | 0 | logfile |
✔ | 6ZLQ | 11272 | 2023-11-21 | 2020-07-01 | 3.3 | 3.41 | — | 3.3 | 0.009 | 0.74 | 0.0 | 0.04 | 17.49 | 0.00 | 0.983 | 15.93 | 8.48 | 3.6 | 96.4 | 0.0 | -3.01 | 0.81 | 0.83 | 1.76 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 18.12 | 0.00 | 1.266 | 15.10 | 0.74 | 1.0 | 99.0 | 0.0 | 3.43 | 0.70 | 0.80 | 0.84 | 1.08 | 33823 | 4185 | 38 | 0 | 16 | 0 | 0 | logfile |
✔ | 7DSK | 30835 | 2023-11-14 | 2020-12-31 | 2.9 | 3.17 | — | 3.2 | 0.011 | 1.12 | 0.0 | 0.49 | 15.04 | 0.01 | 1.969 | 4.94 | 0.63 | 8.2 | 91.3 | 0.5 | -3.42 | 0.69 | 0.86 | 2.76 | 3.2 | 0.004 | 1.20 | 0.0 | 0.12 | 15.51 | 0.00 | 2.172 | 7.12 | 1.65 | 7.5 | 92.4 | 0.1 | 0.69 | 0.56 | 0.69 | 0.87 | 2.58 | 7524 | 935 | 8 | 0 | 12 | 12 | 0 | logfile |