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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7UUZ | 26807 | 2023-12-07 | 2022-04-29 | 3.2 | 3.25 | 1.51 | 3.2 | 0.006 | 0.57 | 0.0 | 0.04 | 13.54 | 0.00 | 2.186 | 5.97 | 0.51 | 5.9 | 94.1 | 0.0 | 1.14 | 0.62 | 0.78 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3786 | 501 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7YGA | 33813 | 2024-01-18 | 2022-07-11 | 2.35 | 3.08 | 2.44 | 2.8 | 0.008 | 0.62 | 0.0 | 0.04 | 23.34 | 0.01 | 1.779 | 10.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.87 | — | 2.8 | 0.007 | 0.61 | 0.0 | 0.04 | 23.07 | 0.00 | 1.828 | 12.18 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.89 | 0.88 | — | 8692 | 0 | 3 | 407 | 8 | 0 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-09-30 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-11-15 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-07-06 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 7CZU | 30517 | 2023-12-15 | 2020-09-09 | 3.4 | 3.49 | — | 3.4 | 0.011 | 1.00 | 0.0 | 0.07 | 17.50 | 0.01 | 1.945 | 20.35 | 11.32 | 10.1 | 88.8 | 1.1 | -3.75 | 0.66 | 0.75 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31120 | 3878 | 31 | 0 | 70 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-10-04 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-11-14 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-08-12 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 7DWZ | 30890 | 2023-12-13 | 2021-01-18 | 3.3 | 3.37 | — | 3.3 | 0.012 | 1.03 | 0.0 | 0.09 | 17.98 | 0.01 | 1.909 | 25.24 | 12.63 | 10.2 | 86.4 | 3.5 | -4.12 | 0.70 | 0.75 | 1.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24598 | 3019 | 28 | 0 | 71 | 0 | 0 | logfile |
✘ | 6X19 | 21993 | 2023-07-06 | 2020-05-18 | 2.1 | 2.20 | 2.11 | 2.1 | 0.009 | 1.29 | 6.0 | 0.08 | 14.30 | 0.01 | 2.134 | 12.92 | 1.01 | 2.7 | 97.3 | 0.1 | -1.61 | 0.73 | 0.84 | 4.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10277 | 1258 | 9 | 0 | 1 | 136 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-07-05 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-12-08 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-10-05 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 6WD0 | 21619 | 2023-09-01 | 2020-03-31 | 3.0 | 3.31 | 3.13 | 3.2 | 0.006 | 0.97 | 0.0 | 0.08 | 13.22 | 0.01 | 2.187 | 7.90 | 0.75 | 10.1 | 87.9 | 2.1 | -4.83 | 0.83 | 0.86 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148592 | 6024 | 58 | 4734 | 0 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-08-11 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CZX | 30520 | 2023-11-21 | 2020-09-09 | 2.8 | 2.91 | — | 2.9 | 0.011 | 1.10 | 1.0 | 0.07 | 17.79 | 0.01 | 1.913 | 29.18 | 11.08 | 11.0 | 85.5 | 3.5 | -3.96 | 0.66 | 0.73 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34879 | 4368 | 32 | 0 | 71 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-09-29 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YGA | 33813 | 2024-03-11 | 2022-07-11 | 2.35 | 3.08 | 2.44 | 2.8 | 0.008 | 0.62 | 0.0 | 0.04 | 24.74 | 0.01 | 1.779 | 10.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.87 | — | 2.8 | 0.007 | 0.61 | 0.0 | 0.04 | 24.28 | 0.00 | 1.825 | 12.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.89 | 0.88 | — | 8692 | 0 | 3 | 407 | 8 | 0 | 0 | logfile |
✔ | 7YGA | 33813 | 2024-02-14 | 2022-07-11 | 2.35 | 3.08 | 2.44 | 2.8 | 0.008 | 0.62 | 0.0 | 0.04 | 24.74 | 0.01 | 1.779 | 10.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.87 | — | 2.8 | 0.007 | 0.61 | 0.0 | 0.04 | 24.28 | 0.00 | 1.825 | 12.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.89 | 0.88 | — | 8692 | 0 | 3 | 407 | 8 | 0 | 0 | logfile |