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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6ZXF | 11519 | 2024-03-17 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 22.23 | 0.01 | 1.937 | 8.48 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 22.24 | 0.00 | 1.004 | 16.01 | 4.32 | 6.1 | 93.9 | 0.0 | -1.19 | 0.56 | 0.88 | 0.82 | 1.40 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |
✔ | 6ZXF | 11519 | 2023-07-14 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 16.80 | 0.01 | 1.937 | 8.48 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.85 | 0.00 | 1.065 | 14.28 | 0.59 | 5.0 | 95.0 | 0.0 | -0.99 | 0.58 | 0.87 | 0.82 | 1.32 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |
✔ | 7SK9 | 25177 | 2023-08-12 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.007 | 0.83 | 0.0 | 0.24 | 13.94 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.003 | 0.49 | 0.0 | 0.04 | 14.87 | 0.00 | 2.033 | 6.18 | 0.00 | 4.0 | 96.0 | 0.0 | 1.35 | 0.43 | 0.70 | 0.81 | 1.96 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 6ZXF | 11519 | 2024-02-19 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 22.23 | 0.01 | 1.937 | 8.48 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 22.24 | 0.00 | 1.004 | 16.01 | 4.32 | 6.1 | 93.9 | 0.0 | -1.19 | 0.56 | 0.88 | 0.82 | 1.40 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |
✔ | 7SK9 | 25177 | 2023-07-06 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.007 | 0.83 | 0.0 | 0.24 | 13.94 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.003 | 0.49 | 0.0 | 0.04 | 14.87 | 0.00 | 2.033 | 6.18 | 0.00 | 4.0 | 96.0 | 0.0 | 1.35 | 0.43 | 0.70 | 0.81 | 1.96 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7SK9 | 25177 | 2023-12-09 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.005 | 0.62 | 0.0 | 0.05 | 15.65 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.002 | 0.47 | 0.0 | 0.04 | 14.16 | 0.00 | 2.055 | 5.20 | 0.00 | 2.8 | 97.2 | 0.0 | 1.47 | 0.42 | 0.70 | 0.81 | 1.83 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7N58 | 24182 | 2024-01-18 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.08 | 0.00 | 2.197 | 9.58 | 1.59 | 3.8 | 96.2 | 0.0 | 1.02 | 0.54 | 0.64 | 0.71 | 0.97 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK9 | 25177 | 2023-10-05 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.007 | 0.83 | 0.0 | 0.24 | 13.94 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.003 | 0.49 | 0.0 | 0.04 | 14.87 | 0.00 | 2.033 | 6.18 | 0.00 | 4.0 | 96.0 | 0.0 | 1.35 | 0.43 | 0.70 | 0.81 | 1.96 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7SK9 | 25177 | 2023-11-15 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.005 | 0.62 | 0.0 | 0.05 | 13.87 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.002 | 0.48 | 0.0 | 0.04 | 14.54 | 0.00 | 2.052 | 5.47 | 0.00 | 2.5 | 97.5 | 0.0 | 1.38 | 0.42 | 0.70 | 0.81 | 2.01 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7N58 | 24182 | 2023-06-16 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK9 | 25177 | 2023-09-30 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.007 | 0.83 | 0.0 | 0.24 | 13.94 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.003 | 0.49 | 0.0 | 0.04 | 14.87 | 0.00 | 2.033 | 6.18 | 0.00 | 4.0 | 96.0 | 0.0 | 1.35 | 0.43 | 0.70 | 0.81 | 1.96 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7N58 | 24182 | 2023-07-05 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2023-08-11 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2023-09-29 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2023-10-04 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2023-11-14 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2024-02-14 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.08 | 0.00 | 2.197 | 9.58 | 1.59 | 3.8 | 96.2 | 0.0 | 1.02 | 0.54 | 0.64 | 0.71 | 0.97 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2023-12-08 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.13 | 0.00 | 2.172 | 9.16 | 0.30 | 4.4 | 95.6 | 0.0 | 0.88 | 0.60 | 0.64 | 0.72 | 0.88 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2024-03-14 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.08 | 0.00 | 2.197 | 9.58 | 1.59 | 3.8 | 96.2 | 0.0 | 1.02 | 0.54 | 0.64 | 0.71 | 0.97 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZXF | 11519 | 2023-08-20 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 16.80 | 0.01 | 1.937 | 8.48 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.85 | 0.00 | 1.065 | 14.28 | 0.59 | 5.0 | 95.0 | 0.0 | -0.99 | 0.58 | 0.87 | 0.82 | 1.32 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |