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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6W5V | 21549 | 2023-11-17 | 2020-03-13 | 4.0 | 4.11 | — | 4.0 | 0.008 | 1.37 | 4.0 | 0.18 | 16.89 | 0.01 | 1.979 | 62.54 | 9.99 | 7.0 | 92.3 | 0.7 | -2.21 | 0.63 | 0.75 | — | 4.0 | 0.003 | 0.88 | 0.0 | 0.05 | 16.72 | 0.01 | 2.047 | 14.88 | 0.35 | 5.8 | 94.2 | 0.0 | -0.38 | 0.86 | 0.63 | 0.77 | — | 10586 | 1307 | 9 | 0 | 24 | 0 | 0 | logfile |
✔ | 6C9Y | 7438 | 2023-11-20 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.62 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 13.56 | 0.01 | 2.096 | 20.48 | 0.06 | 6.8 | 93.1 | 0.1 | -1.47 | 2.40 | 0.61 | 0.38 | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 5ZSU | 6952 | 2023-11-21 | 2018-04-29 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.45 | — | — | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 12.28 | 0.00 | 2.146 | 16.96 | 0.03 | 8.5 | 91.5 | 0.0 | -1.52 | — | 0.70 | 0.76 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8E97 | 27958 | 2023-11-17 | 2022-08-26 | 4.19 | 3.55 | 4.21 | 3.4 | 0.007 | 1.06 | 6.0 | 0.07 | 13.30 | 0.01 | 1.822 | 12.52 | 1.35 | 13.4 | 85.9 | 0.7 | -5.58 | 0.60 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20374 | 3074 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 6iRA | 9714 | 2023-11-18 | 2018-11-12 | 4.5 | 5.18 | — | 5.1 | 0.009 | 1.42 | 13.0 | 0.07 | 8.45 | 0.01 | 1.413 | 20.24 | 0.12 | 10.0 | 89.1 | 0.9 | -3.53 | 0.60 | 0.69 | — | 5.1 | 0.004 | 0.81 | 0.0 | 0.05 | 12.47 | 0.00 | 2.118 | 21.34 | 0.08 | 8.8 | 90.9 | 0.3 | -1.42 | 2.19 | 0.61 | 0.73 | — | 23932 | 3080 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWP | 20510 | 2023-11-16 | 2019-07-23 | 4.1 | 6.04 | 4.26 | 4.4 | 0.010 | 0.86 | 0.0 | 0.05 | 13.54 | 0.00 | 2.096 | 24.59 | 0.31 | 6.8 | 93.2 | 0.0 | -3.74 | 0.80 | 0.87 | — | 4.4 | 0.004 | 0.63 | 0.0 | 0.04 | 13.58 | 0.00 | 2.101 | 15.10 | 0.00 | 4.7 | 95.3 | 0.0 | 0.14 | 1.26 | 0.80 | 0.86 | — | 14903 | 1960 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DZW | 8941 | 2023-11-14 | 2018-07-05 | 4.3 | 4.31 | 5.22 | 4.9 | 0.004 | 0.87 | 0.0 | 0.09 | 13.54 | 0.01 | 2.052 | 3.87 | 0.36 | 3.2 | 96.8 | 0.0 | -4.99 | 0.45 | 0.53 | — | 5.0 | 0.003 | 0.74 | 0.0 | 0.04 | 13.38 | 0.00 | 2.157 | 19.66 | 0.12 | 5.0 | 95.0 | 0.0 | -1.29 | 1.77 | 0.48 | 0.61 | — | 7829 | 988 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7BKD | 12210 | 2023-11-19 | 2021-01-15 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24799 | 3177 | 18 | 0 | 26 | 0 | 0 | logfile |
✔ | 6SJE | 10215 | 2023-11-18 | 2019-08-13 | 4.1 | 4.27 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.69 | 0.01 | 2.264 | 4.40 | 3.06 | 2.1 | 97.9 | 0.0 | -3.60 | 0.82 | 0.77 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 15.34 | 0.00 | 2.078 | 15.12 | 0.00 | 3.6 | 96.4 | 0.0 | 0.42 | 1.78 | 0.84 | 0.82 | — | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✔ | 6NBi | 0412 | 2023-11-14 | 2018-12-07 | 4.0 | 4.43 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 8.85 | 0.00 | 2.337 | 2.35 | 0.31 | 2.8 | 97.2 | 0.0 | -1.70 | 0.62 | 0.74 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 16.22 | 0.00 | 2.115 | 18.96 | 0.72 | 2.7 | 97.3 | 0.0 | -0.13 | 2.54 | 0.64 | 0.78 | — | 9195 | 1141 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7DBP | 30161 | 2023-11-16 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.36 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.005 | 0.63 | 0.0 | 0.03 | 30.39 | 0.00 | 2.159 | 26.09 | 0.00 | 3.8 | 96.2 | 0.0 | 1.11 | 2.53 | 0.90 | 0.74 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✔ | 6V3G | 21036 | 2023-11-20 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.47 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 12.72 | 0.00 | 2.157 | 14.36 | 0.19 | 3.5 | 96.5 | 0.0 | -0.65 | 0.88 | 0.72 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2023-11-16 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2023-11-21 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.73 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.005 | 0.95 | 0.0 | 0.05 | 15.10 | 0.01 | 2.049 | 16.40 | 0.00 | 10.2 | 89.4 | 0.4 | -1.58 | 1.74 | 0.69 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2023-11-13 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.75 | 0.0 | 0.04 | 11.01 | 0.00 | 2.047 | 15.36 | 0.00 | 9.8 | 90.2 | 0.0 | -4.85 | 1.54 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✘ | 6NQ2 | 0479 | 2023-11-15 | 2019-01-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2023-11-17 | 2013-10-28 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18556 | 2448 | 8 | 0 | 44 | 0 | 292 | logfile |
✔ | 7JGE | 22324 | 2023-11-17 | 2020-07-19 | 4.0 | 4.23 | — | 4.2 | 0.002 | 0.44 | 0.0 | 0.05 | 13.35 | 0.00 | 2.115 | 14.01 | 0.00 | 3.7 | 96.3 | 0.0 | 1.11 | 0.54 | 0.54 | — | 4.2 | 0.003 | 0.55 | 0.0 | 0.06 | 15.53 | 0.00 | 2.042 | 17.29 | 0.08 | 7.3 | 92.7 | 0.0 | 0.23 | 0.64 | 0.60 | 0.65 | — | 20315 | 1437 | 1 | 0 | 0 | 0 | 8508 | logfile |
✔ | 7R7U | 24305 | 2023-11-19 | 2021-06-25 | 4.3 | 4.05 | — | 3.8 | 0.005 | 1.09 | 0.0 | 0.06 | 15.34 | 0.01 | 2.278 | 7.09 | 0.04 | 8.8 | 91.2 | 0.0 | -3.72 | 0.78 | 0.72 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.05 | 14.74 | 0.01 | 2.137 | 20.81 | 0.07 | 8.2 | 91.7 | 0.0 | -1.23 | 0.89 | 0.79 | 0.73 | — | 25362 | 3240 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CGV | 16652 | 2023-11-20 | 2023-02-06 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87899 | 2819 | 67 | 2743 | 307 | 6570 | 0 | logfile |