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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BF8 | 16016 | 2023-11-13 | 2022-10-24 | 2.8 | 3.14 | 2.80 | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 13.85 | 0.00 | 2.203 | 8.73 | 0.93 | 2.7 | 97.3 | 0.0 | 0.92 | 0.64 | 0.76 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4686 | 302 | 2 | 111 | 0 | 0 | 0 | logfile |
✘ | 7M6F | 23694 | 2023-11-18 | 2021-03-25 | 3.9 | 4.35 | — | 4.1 | 0.006 | 1.00 | 4.0 | 0.07 | 10.47 | 0.01 | 1.869 | 10.66 | 0.00 | 3.9 | 96.1 | 0.0 | 0.42 | 0.78 | 0.76 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24304 | 3446 | 25 | 0 | 63 | 0 | 0 | logfile |
✘ | 7BKE | 12212 | 2023-11-19 | 2021-01-15 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24816 | 3176 | 18 | 0 | 26 | 0 | 0 | logfile |
✘ | 7YS6 | 34073 | 2023-11-14 | 2022-08-11 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8794 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-11-18 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZDL | 14653 | 2023-11-14 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9029 | 1152 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7PFo | 13375 | 2023-11-17 | 2021-08-11 | 3.2 | 4.02 | 3.48 | 3.1 | 0.007 | 1.03 | 0.0 | 0.06 | 14.55 | 0.01 | 2.051 | 0.51 | 1.37 | 3.3 | 96.6 | 0.0 | -0.83 | 0.80 | 0.77 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68086 | 8367 | 29 | 54 | 13 | 0 | 0 | logfile |
✘ | 7AMY | 11827 | 2023-11-19 | 2020-10-09 | 3.75 | 3.87 | 3.71 | 3.8 | 0.010 | 0.89 | 0.0 | 0.05 | 14.93 | 0.00 | 2.177 | 20.18 | 0.66 | 13.8 | 85.9 | 0.3 | -5.40 | 0.82 | 0.86 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24849 | 3177 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2023-11-14 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✘ | 6WUB | 21909 | 2023-11-21 | 2020-05-04 | 3.2 | 2.63 | — | 2.9 | 0.009 | 0.97 | 0.0 | 0.05 | 16.48 | 0.01 | 2.029 | 6.59 | 18.19 | 13.4 | 86.2 | 0.4 | -4.06 | 0.71 | 0.84 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33949 | 1253 | 12 | 1121 | 0 | 0 | 0 | logfile |
✘ | 7U9Q | 26405 | 2023-11-20 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.10 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6o90 | 0660 | 2023-11-20 | 2019-03-12 | 3.49 | 3.96 | — | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 15.53 | 0.01 | 2.125 | 5.34 | 0.46 | 13.8 | 85.9 | 0.3 | -4.68 | 0.86 | 0.82 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138532 | 5232 | 53 | 4547 | 4 | 0 | 0 | logfile |
✘ | 7UA9 | 26416 | 2023-11-20 | 2022-03-11 | 3.59 | 3.94 | — | 2.0 | 0.010 | 0.88 | 4.0 | 0.04 | 14.73 | 0.01 | 1.935 | 14.89 | 1.82 | 3.1 | 96.8 | 0.1 | 0.41 | 0.85 | 0.79 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138656 | 17324 | 12 | 0 | 20 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2023-11-16 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7W5A | 32319 | 2023-11-21 | 2021-11-29 | 3.6 | 3.89 | — | 3.6 | 0.012 | 1.64 | 129.0 | 0.11 | 14.83 | 0.01 | 1.346 | 18.76 | 3.67 | 6.0 | 93.3 | 0.8 | -2.96 | 0.66 | 0.62 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96822 | 12633 | 61 | 416 | 19 | 0 | 0 | logfile |
✘ | 7U9R | 26407 | 2023-11-20 | 2022-03-11 | 3.69 | 3.91 | — | 2.1 | 0.003 | 0.85 | 8.0 | 0.04 | 15.09 | 0.01 | 1.708 | 13.03 | 2.45 | 2.4 | 97.5 | 0.1 | 1.06 | 0.80 | 0.69 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138656 | 17324 | 12 | 0 | 20 | 0 | 0 | logfile |
✘ | 8BDR | 15984 | 2023-11-22 | 2022-10-19 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36256 | 2173 | 8 | 43 | 3 | 0 | 17940 | logfile |
✘ | 7W5B | 32321 | 2023-11-13 | 2021-11-29 | 4.3 | 4.80 | — | 4.3 | 0.012 | 1.56 | 60.0 | 0.10 | 14.18 | 0.01 | 1.346 | 16.34 | 2.51 | 5.8 | 93.5 | 0.7 | -3.06 | 0.65 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106538 | 14610 | 62 | 416 | 19 | 0 | 0 | logfile |
✘ | 6JCW | 9799 | 2023-11-20 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✘ | 8DG5 | 27416 | 2023-11-16 | 2022-06-23 | 3.26 | 3.59 | 3.37 | 3.5 | 0.011 | 1.42 | 1.0 | 0.06 | 14.99 | 0.01 | 2.013 | 8.22 | 0.00 | 8.0 | 91.7 | 0.3 | -2.73 | 0.69 | 0.69 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16269 | 1887 | 5 | 50 | 12 | 0 | 0 | logfile |